suba logo
AT4G27280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: pinoid-binding protein 1 (TAIR:AT5G54490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0028EMBL:AL030978EMBL:AL161566
EMBL:AY058165EMBL:AY085115EMBL:AY098973EMBL:AY363867
EMBL:CP002687EnsemblPlants:AT4G27280EnsemblPlants:AT4G27280.1entrez:828836
Gene3D:1.10.238.10GeneID:828836GO:GO:0005509GO:GO:0080167
Gramene:AT4G27280.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF585HOGENOM:HOG000238343
IntAct:O81831InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT4G27280OMA:NDFLPLMPfam:PF13833Pfscan:PS50222
PhylomeDB:O81831PIR:T05752PROSITE:PS00018PROSITE:PS50222
Proteomes:UP000006548RefSeq:NP_194458.1scanprosite:PS00018SMR:O81831
STRING:3702.AT4G27280.1SUPFAM:SSF47473TAIR:AT4G27280UniGene:At.20958
UniProt:O81831
Coordinates (TAIR10) chr4:-:13663770..13664162
Molecular Weight (calculated) 14503.40 Da
IEP (calculated) 4.28
GRAVY (calculated) -0.24
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPKSPTRP TQQNPQPNFH DFLPTMAGNL GGEGLIGELC NGFELLMDRE KGVITFESLR RNAAAVLGLG DLTDEDVRCM IKEGDFDCDG ALNQMEFCVL
101: MFRLSPDLME ASRCLVTEVI EEEFGFTRRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)