AT4G19610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleotide binding;nucleic acid binding;RNA binding | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleotide binding;nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10677482..10681623 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91568.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||
| Length | 816 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRICVKNLP KHVKEDQLRD HFSQKGEITD AKLMRSNDGK SRQFGFIGFR SAQEAQQAIK YFNNTYLGTS LIIVEIAHKV GDENAPRPWS RLSHKKEEEA 101: KKSSSEGLKD GNAKGGKKRK AEVDDPEFQE FLEVHQRSKS KIWSNDMSIP PAPEETGKEK VLVKKADEQI VSNGVEPKKA KKSSDTEKTK KSKVVAASDD 201: VSDMEYFKSR IKKNLSDSES DNESEDSSED EAGDDDGKAE TDGQDADIRY FPIDGDVEAG GVGKDDDGDA MEVEGDGKVA QESKAVSDDV LDTGRLFVRN 301: LPYTATEEEL MEHFSTFGKI SEVHLVLDKE TKRSRGIAYI LYLIPECAAR AMEELDNSSF QGRLLHILPA KHRETSDKQV NDTSNLPKTF KQKREEQRKA 401: SEAGGDTKAW NSLFMRPDTI LENIVRVYGV SKSELLDREA EDPAVRLALG ETKVIAETKE ALAKAGVNVT SLEKFATRNG DEKNRSKHIL LVKNLPFAST 501: EKELAQMFGK FGSLDKIILP PTKTMALAVF LEPAEARAAL KGMAYKRYKD APLYLEWAPG NILEPKNLPD TNEERSDIEE NGVRRVNLEQ QVEIDPDVTE 601: SNVLNVKNLS FKTTDEGLKK HFTKLVKQGK ILSVTIIKHK KNEKYLSSGY GFVEFDSVET ATSVYRDLQG TVLDGHALIL RFCENKRSDK VGKDSNKDKP 701: CTKLHVKNIA FEATKRELRQ LFSPFGQIKS MRLPKKNIGQ YAGYAFVEFV TKQEALNAKK ALASTHFYGR HLVLEWANDD NSMEAIRKRS AAKFDEENDN 801: ARKRKSSKAV EGKNEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)