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AT4G18160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16984403 (2006): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ca2+ activated outward rectifying K+ channel 6
Curator
Summary (TAIR10)
Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.
Computational
Description (TAIR10)
Ca2+ activated outward rectifying K+ channel 6 (KCO6); FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 2 (TAIR:AT5G46370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2845-MONOMERBioGrid:12834eggNOG:COG1226eggNOG:KOG1418EMBL:AL110123EMBL:AL161548EMBL:CP002687
EnsemblPlants:AT4G18160EnsemblPlants:AT4G18160.1entrez:827541GeneID:827541Genevisible:Q9SVV6GO:GO:0005267GO:GO:0009535
GO:GO:0009705GO:GO:0016021GO:GO:0046872Gramene:AT4G18160.1hmmpanther:PTHR11003hmmpanther:PTHR11003:SF126HOGENOM:HOG000238193
InParanoid:Q9SVV6InterPro:IPR003280InterPro:IPR011992InterPro:IPR013099InterPro:IPR018247KEGG:ath:AT4G18160KO:K05389
MINT:MINT-8066024OMA:WLIDPNYPaxDb:Q9SVV6Pfam:PF07885Pfam:Q9SVV6PhylomeDB:Q9SVV6PIR:T14816
PRIDE:Q9SVV6PRINTS:PR01333PRO:PR:Q9SVV6PROSITE:PS00018ProteinModelPortal:Q9SVV6Proteomes:UP000006548RefSeq:NP_193550.1
scanprosite:PS00018SMR:Q9SVV6STRING:3702.AT4G18160.1SUPFAM:SSF47473SUPFAM:SSF81324TAIR:AT4G18160tair10-symbols:ATKCO6
tair10-symbols:ATTPK3tair10-symbols:KCO6tair10-symbols:TPK3TCDB:1.A.1.7.7TMHMM:TMhelixUniGene:At.32938UniProt:Q9SVV6
Coordinates (TAIR10) chr4:+:10055696..10057546
Molecular Weight (calculated) 48734.40 Da
IEP (calculated) 7.50
GRAVY (calculated) 0.01
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MANEGSDPLL QYMISPRLKK PPQLLFPLPE DNEVAIPMPM TPSEFKERLI FGPFSCSPRD SSHFIDSMKQ PSPSSSSTAV NNPFSDSSTL DPLLPPPPPQ
101: PEPWLSDQTS SHCQGHALHR SKTAPAMAVI NDLHHPIRQK DPTETSRSVV RQAFALLVVY LSLGVLIYWL NRDHYVVNQT HPVVDGLYFC IVTMCTIGYG
201: DITPNSVVTK LFSIMFVLVG FGFIDILLSG MVSYVLDLQE SYMLDSAKRR DEPEKRRSYI IDVKKGRMRI RLKVALALGV VVLCIAVGVG IMHFIEEIGW
301: LDSFYLSVMS VTTVGYGDRA FKTLPGRLFA AIWLLVSTLA VARAFLYLAE ARVDKRNRER AKKVLCETMS VSQFFAADID NNGCVSKAEY VIYKLKEMEK
401: ITDKDILPIS KQFDKLDRCS NGKITLLDLL EGGSGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)