AT4G17620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine-rich protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9822005..9824859 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60384.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||
| Length | 544 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSPPKKNPM DDLFGEDSDN DSRSSRSKSS SSGNASSSSS SSSSSSSSSS AAGGDGEGDG GGADSGSASD SGSGSSGGKE EHGDDKVESY RSNDNGESGV 101: YPYEEEEEEE EDEKDLFGSD NEEYTKTPAI STYSIPVLPA GWSNDNHGGR GGMGRGRWSN GRGGPGLLPR PGPYPGRGGN RGGFGGRYQN YQRDERFVSE 201: LKLSKSKETL ARKQTNFQEP CELTCYSRVE GGEVIYDDQG LRLFKRHIGE EIGADLNQGY DTFIEKKDLG SEGFGDLLGS IRAKNISLDN IHFVTFRNNL 301: NKILGAAYNR HEPWEMGVHK RNGTIYLDVH KLPERPQSDL DRRRCYWGYC FESLATEDPG RAYGEEIHHV DANVEFCSVV RTKLGAHRVM MGAEMDCCDV 401: SDKGKRFYVE LKTTRELDDR TVDRFEREKL LKFWIQSFVA GVPYIVVGFR DDGGRLVRTE RLTTRDIAHR ARLKNYWQGG VCLAFADEVL CWLYGTVKEN 501: EDYILQFVHP FMRLELLQAQ SCPDAITNHV HLLQNPASPP PPPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)