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AT4G15830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.913
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSBPeggNOG:KOG2933EMBL:CP002687EnsemblPlants:AT4G15830
EnsemblPlants:AT4G15830.1entrez:827264Gene3D:1.25.10.10GeneID:827264
Gramene:AT4G15830.1hmmpanther:PTHR21567hmmpanther:PTHR21567:SF35InParanoid:F4JKW9
InterPro:IPR011989InterPro:IPR016024InterPro:IPR024395KEGG:ath:AT4G15830
OMA:TMKNPRSPaxDb:F4JKW9Pfam:PF12348PRIDE:F4JKW9
ProteinModelPortal:F4JKW9Proteomes:UP000006548RefSeq:NP_567477.1STRING:3702.AT4G15830.1
SUPFAM:SSF48371TAIR:AT4G15830UniGene:At.48861UniGene:At.68470
UniProt:F4JKW9
Coordinates (TAIR10) chr4:-:8995285..8996548
Molecular Weight (calculated) 33272.30 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.32
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MALRNIENAL PISQERPKKL AKLSKQPEIG LNDENNPVAV AESTVEYVAS ENLKPFSDPE SSVQRLLEEL ASKDWIKVCD SLNNTRRFAI HHSSLLLPIL
101: EKLIVVMVKA MKNPRSALCK TSIMTCSDIF TAYGEKLLEG PHLKSMDDLL LQLLMKASQD KKFVCEEAEK ALNTMVNSVA RLPLLRKLQS YVRHSNPRVR
201: AKAAVSTSNC VSKMEVNEME EFGMILLAQM AADQLSDKLP EAREAARSMV NSLFEKFTWN EEEDEEGSKQ EAWKKFCEKN VTGLNAQAMI KIVASQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)