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AT4G14990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Topoisomerase II-associated protein PAT1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Topoisomerase II-associated protein PAT1; BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2ReggNOG:ENOG410YXYMEMBL:AY035039EMBL:CP002687EnsemblPlants:AT4G14990EnsemblPlants:AT4G14990.1entrez:827158
GeneID:827158GO:GO:0016853Gramene:AT4G14990.1hmmpanther:PTHR21551hmmpanther:PTHR21551:SF4HOGENOM:HOG000238316KEGG:ath:AT4G14990
KO:K12617OMA:SHIHRAPPhylomeDB:Q94C98Proteomes:UP000006548RefSeq:NP_567452.2STRING:3702.AT4G14990.1TAIR:AT4G14990
UniGene:At.21216UniProt:Q94C98
Coordinates (TAIR10) chr4:-:8566259..8569511
Molecular Weight (calculated) 86519.00 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.55
Length 787 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSDSRDFY NFAKTSSDNN SALFDASQYE FFGQSLEEVE LGGLDDDGTV RGHVDDEEYH LFDKREGAGL GSLSDMDDLA TTFAKLNRNV TGPKHLGVIG
101: DRGSGSFSRE SSTATDWTQD NEFTSWLDQH TVEEQVQEAS WSSQPQSSPN SNSLYRTSSY PQQQTQLQHY SSEPIIVPES TFTSFPSPGK RSQQSSPSHI
201: HRAPSLPGGS QSNFSAPNAS PLSNSTFHLS GLSHGPSHYG NNLARYASCG PTLGNMVQQP PHWVTDPGLL HGDHSALLHS LMQQQHLQQL PPRNGFTSQQ
301: LISLQQRQSL AHLAALQSQL YSSYPSPSHK ALFGVGEVRE HKHKSSHRSR KNRGGISQQT SDLASQKSES GLQFRSKYMT SEEIESILKM QHSNSHSSDP
401: YVNDYYHQAR LAKKSSGSRT KPQLYPSHLK DHQSRSRNSS DQQPQVHVDA LGKITLPSIC RPRALLEVDS PPSSGHKHLE DEPLVAARVT IEDAFGVLID
501: IVDIDRTLQF NRPQDGGAQL RRKRQILLEG LATSLQLVDP FSKTGQKTGL TTKDDIVFLR ITTLPKGRKL LTKYLQLLVP GTEIARVVCM AVFRHLRFLF
601: GGLPSDSLAA ETIANLAKAV TVCVQAMDLR ALSACLAAVV CSSEQPPLRP IGSSSGDGAS VVLVSLLERA AEVIVAVVPP RVSNHGNPND GLWRASFDEF
701: FSLLTKYCRS KYETIHGQNH DNAADVLELA IKREMPAELL RASLRHTNED QRNFLLNVGR SASPVSESTT TRASASGGQI NSEFVRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)