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AT4G12240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G52010.1); Has 77 Blast hits to 77 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJWCeggNOG:ENOG410YAG1EMBL:AK118936EMBL:AL080318EMBL:AL161533EMBL:BT005409EMBL:CP002687
EnsemblPlants:AT4G12240EnsemblPlants:AT4G12240.1entrez:826832Gene3D:3.40.50.1010GeneID:826832GO:GO:0003700GO:GO:0005739
GO:GO:0006355GO:GO:0046872Gramene:AT4G12240.1hmmpanther:PTHR35744hmmpanther:PTHR35744:SF2HOGENOM:HOG000240853InterPro:IPR007087
InterPro:IPR021139InterPro:IPR029060KEGG:ath:AT4G12240OMA:KRLEWTYPfam:PF01936Pfscan:PS50157PhylomeDB:Q9STI7
PIR:T48134PROSITE:PS00028PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_192961.1scanprosite:PS00028SMR:Q9STI7
SUPFAM:SSF57667TAIR:AT4G12240UniGene:At.48849UniGene:At.66589UniProt:Q9STI7
Coordinates (TAIR10) chr4:+:7287895..7288989
Molecular Weight (calculated) 41911.10 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.67
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)