AT4G10070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : KH domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G33680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6295608..6299759 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77205.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.38 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||
| Length | 725 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEEDFVVIS TPPVDLKRKL DEVELNGNIV DDSNQTSDSS QAKRAKLEDE AQDGLDYGNT QENGSSMEVK EEEQLQEPKE ENQDSVPLVE EVQDPIHADE 101: SENKICSVDQ PTDDQVKPED NQQGCIEDVN GGEHQKVIDD DSKEVNDGSS QENGKEENKE VDGEKSQKEV DGTQSTTRRI DVPSSKVGVL IGKGGETIRY 201: LQFNSGAKIQ ILRDSEADPS SALRPVEIIG SVACIESAEK LISAVIAEAE AGGSPALVAR GHPSTHAIGI PEQIEIKVPN DKVGLIIGRG GETIKNMQTR 301: SGARTQLIPQ HAEGDGLKER TVRISGDKMQ IDIATDMIKD VMNQNARPSS YSGGYNQPAY RPQGPGGPPQ WGSRGPHAPH PYDYHPRGPY SSQGSYYNSP 401: GFGGYPPQHM PPRGGYGTDW DQRPPYSGPY NYYGRQGAQS AGPVPPPSGP VPSPAFGGPP LSQVSYGYGQ SHGPEYGHAA PYSQTGYQQT YGQTYEQPKY 501: DSNPPMQPPY GGSYPPAGGG QSGYYQMQQP GVRPYGMQQG PVQQGYGPPQ PAAAASSGDV PYQGATPAAP SYGSTNMAPQ QQQYGYTSSD GPVQQQTYPS 601: YSSAPPSDAY NNGTQTPATG PAYQQQSVQP ASSTYDQTGA QQAAAAGYGG QVAPTGGYTY PTSQPAYGSQ AAYSQAAPTQ TGYEQQPATQ AAVYATAPGT 701: APVKTQSPQS AYAQYDASQV YATPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)