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AT4G05060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PapD-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PapD-like superfamily protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G21450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5066eggNOG:KOG0439EMBL:AF162444EMBL:AK221803
EMBL:AL161502EMBL:AY087509EMBL:AY094468EMBL:AY143842
EMBL:CP002687EnsemblPlants:AT4G05060EnsemblPlants:AT4G05060.1entrez:825848
Gene3D:2.60.40.360GeneID:825848Genevisible:Q8LPQ7GO:GO:0005789
Gramene:AT4G05060.1hmmpanther:PTHR10809hmmpanther:PTHR10809:SF46HOGENOM:HOG000242369
InParanoid:Q8LPQ7InterPro:IPR000535InterPro:IPR008962InterPro:IPR016763
KEGG:ath:AT4G05060OMA:AATIPSMPANTHER:PTHR10809PaxDb:Q8LPQ7
Pfam:PF00635Pfam:Q8LPQ7Pfscan:PS50202PhylomeDB:Q8LPQ7
PIR:F85063PRIDE:Q8LPQ7PRO:PR:Q8LPQ7PROSITE:PS50202
ProteinModelPortal:Q8LPQ7Proteomes:UP000006548RefSeq:NP_567287.1STRING:3702.AT4G05060.1
SUPFAM:SSF49354TAIR:AT4G05060UniGene:At.33926UniProt:Q8LPQ7
Coordinates (TAIR10) chr4:-:2590245..2592000
Molecular Weight (calculated) 31965.10 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.67
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MALTEDKSDS DGRRWGKFKL PFRNSNSQAP SASSSSSMAT SSSSVTSSHL NQNYIHQSRH FQYHGPPVVE GLGQNHHQSA ATIPSMSSVA RSLLPTKRRL
101: KLDPSAKLYF PYEPGKQVRS AIKIKNTSKS HVAFKFQTTV PKSCFMRPAG AILAPGEEII ATVFKFVEPP ENNEKPMEQK SGVKFKIMSL KMKVPTDYMP
201: ELFEEQKDHV SEEQVMRVVF LDPENPNSMM EKLKSQLAEA DAADEARKKA SEGIVGPKPI GEGLVIDEWK QRRERYLAQQ QGGVDAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)