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AT4G03190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRR1-like protein 1
Curator
Summary (TAIR10)
Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.
Computational
Description (TAIR10)
GRR1-like protein 1 (GRH1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G62980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13336DIP:DIP-34607NeggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AC005275EMBL:AF291816EMBL:AL161496
EMBL:AY045799EMBL:AY150427EMBL:CP002687EnsemblPlants:AT4G03190EnsemblPlants:AT4G03190.1entrez:828045Gene3D:3.80.10.10
GeneID:828045Genevisible:Q9ZR12GO:GO:0000822GO:GO:0002237GO:GO:0004842GO:GO:0005634GO:GO:0006952
GO:GO:0009733GO:GO:0009734GO:GO:0010011GO:GO:0010152GO:GO:0019005GO:GO:0045014Gramene:AT4G03190.1
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF456HOGENOM:HOG000239805InParanoid:Q9ZR12IntAct:Q9ZR12InterPro:IPR001810InterPro:IPR006553
InterPro:IPR032675KEGG:ath:AT4G03190OMA:EYLPALYPaxDb:Q9ZR12Pfam:Q9ZR12PhylomeDB:Q9ZR12PIR:E85040
PRIDE:Q9ZR12PRO:PR:Q9ZR12ProteinModelPortal:Q9ZR12Proteomes:UP000006548RefSeq:NP_567255.1SMART:SM00256SMART:SM00367
SMR:Q9ZR12STRING:3702.AT4G03190.1SUPFAM:SSF52047TAIR:AT4G03190tair10-symbols:AFB1tair10-symbols:ATGRH1tair10-symbols:GRH1
UniGene:At.24291UniGene:At.69891UniPathway:UPA00143UniProt:Q9ZR12
Coordinates (TAIR10) chr4:-:1405108..1407057
Molecular Weight (calculated) 65651.80 Da
IEP (calculated) 7.88
GRAVY (calculated) -0.07
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)