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AT4G01310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal L5P family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, C-terminal (InterPro:IPR020928), Ribosomal protein L5, N-terminal (InterPro:IPR020927); Has 9219 Blast hits to 9219 proteins in 3016 species: Archae - 312; Bacteria - 5408; Metazoa - 222; Fungi - 280; Plants - 343; Viruses - 0; Other Eukaryotes - 2654 (source: NCBI BLink).
Protein Annotations
BioGrid:13238eggNOG:COG0094eggNOG:KOG0398EMBL:AF007269EMBL:AL161491EMBL:AY056194EMBL:AY086243
EMBL:AY114008EMBL:CP002687EnsemblPlants:AT4G01310EnsemblPlants:AT4G01310.1entrez:827947Gene3D:3.30.1440.10GeneID:827947
Genevisible:O04603GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0009570GO:GO:0009735GO:GO:0009941
GO:GO:0016020GO:GO:0019843GO:GO:0022626Gramene:AT4G01310.1HAMAP:MF_01333_Bhmmpanther:PTHR11994hmmpanther:PTHR11994:SF4
HOGENOM:HOG000231311InParanoid:O04603IntAct:O04603InterPro:IPR020929InterPro:IPR020930InterPro:IPR022803InterPro:IPR031309
InterPro:IPR031310KEGG:ath:AT4G01310KO:K02931OMA:EQVMFHEPaxDb:O04603Pfam:O04603Pfam:PF00281
Pfam:PF00673PhylomeDB:O04603PIR:T01713PRIDE:O04603PRO:PR:O04603PROSITE:PS00358ProteinModelPortal:O04603
Proteomes:UP000006548RefSeq:NP_192040.1scanprosite:PS00358SMR:O04603STRING:3702.AT4G01310.1SUPFAM:SSF55282TAIR:AT4G01310
UniGene:At.20244UniProt:O04603
Coordinates (TAIR10) chr4:-:544166..545480
Molecular Weight (calculated) 28345.50 Da
IEP (calculated) 10.70
GRAVY (calculated) -0.28
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPSLLQSS ASSFHGRFSP LAAPSSARML SPPLRNVVKV SASGTVLVEK SEAEKTQRLK TAYLERIIPA LKEEFKYVNI HQVPKVQKIV VNCGIGDAAQ
101: NDKGLEAAMK DIALITGQKP IKTRARASIA TFKIREDQPL GIAVTLRGDV MYSFLDRLIN LALPRTRDFQ GVSPSSFDGN GNYSIGVKDQ GVFPEIRFDA
201: VGKTRGMDVC ISTTAKSDQE GQKLLALMGM PFREGGGGST GAIVRKKKLK SHHFDAKGKG KR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)