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AT3G63190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosome recycling factor, chloroplast precursor
Curator
Summary (TAIR10)
The gene encodes a chloroplast ribosome recycling factor homologue. Analysis of mutants revealed its role in the chloroplast development and eary stages of embryo development.
Computational
Description (TAIR10)
ribosome recycling factor, chloroplast precursor (RRF); FUNCTIONS IN: copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: Ribosome recycling factor (TAIR:AT3G01800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:10808eggNOG:COG0233eggNOG:KOG4759EMBL:AF372883
EMBL:AL138648EMBL:AY056778EMBL:AY092982EMBL:BT002678
EMBL:CP002686EnsemblPlants:AT3G63190EnsemblPlants:AT3G63190.1entrez:825494
Gene3D:1.10.132.20GeneID:825494Genevisible:Q9M1X0GO:GO:0002184
GO:GO:0005507GO:GO:0005829GO:GO:0009507GO:GO:0009570
GO:GO:0009579GO:GO:0009658GO:GO:0009793GO:GO:0009817
GO:GO:0032544GO:GO:0042742GO:GO:0043023Gramene:AT3G63190.1
HAMAP:MF_00040hmmpanther:PTHR20982hmmpanther:PTHR20982:SF8HOGENOM:HOG000040143
InParanoid:Q9M1X0InterPro:IPR002661InterPro:IPR023584iPTMnet:Q9M1X0
KEGG:ath:AT3G63190KO:K02838ncoils:CoilOMA:VQPWEKK
PANTHER:PTHR20982PaxDb:Q9M1X0Pfam:PF01765Pfam:Q9M1X0
PhylomeDB:Q9M1X0PRIDE:Q9M1X0PRO:PR:Q9M1X0ProteinModelPortal:Q9M1X0
Proteomes:UP000006548RefSeq:NP_567141.1SMR:Q9M1X0STRING:3702.AT3G63190.1
SUPFAM:SSF55194TAIR:AT3G63190tair10-symbols:AtcpRRFtair10-symbols:cpRRF
tair10-symbols:HFP108tair10-symbols:RRFTIGRfam:TIGR00496TIGRFAMs:TIGR00496
UniGene:At.19134UniProt:Q9M1X0
Coordinates (TAIR10) chr3:-:23342861..23344640
Molecular Weight (calculated) 30423.80 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.39
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)