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AT3G59940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G44130.1); Has 2977 Blast hits to 2510 proteins in 188 species: Archae - 4; Bacteria - 251; Metazoa - 1720; Fungi - 24; Plants - 858; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
BioGrid:10478eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL138647
EMBL:AY074382EMBL:AY081325EMBL:AY088575EMBL:AY091240
EMBL:CP002686EnsemblPlants:AT3G59940EnsemblPlants:AT3G59940.1entrez:825164
Gene3D:2.130.10.80GeneID:825164Genevisible:Q9M1Y1GO:GO:0005634
GO:GO:0005829GO:GO:0016567GO:GO:0080037GO:GO:2000762
Gramene:AT3G59940.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF34HOGENOM:HOG000239167
InParanoid:Q9M1Y1IntAct:Q9M1Y1InterPro:IPR001810InterPro:IPR006652
InterPro:IPR015916KEGG:ath:AT3G59940OMA:EGRDECHPaxDb:Q9M1Y1
Pfam:PF01344Pfam:Q9M1Y1PhylomeDB:Q9M1Y1PIR:T47818
PRIDE:Q9M1Y1PRO:PR:Q9M1Y1ProteinModelPortal:Q9M1Y1Proteomes:UP000006548
RefSeq:NP_191553.1SMART:SM00256SMART:SM00612SMR:Q9M1Y1
STRING:3702.AT3G59940.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT3G59940
UniGene:At.1165UniGene:At.48785UniPathway:UPA00143UniProt:Q9M1Y1
Coordinates (TAIR10) chr3:+:22143009..22144265
Molecular Weight (calculated) 45972.70 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.27
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)