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AT3G56300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteinyl-tRNA synthetase, class Ia family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteinyl-tRNA synthetase, class Ia family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 11222 Blast hits to 10904 proteins in 2870 species: Archae - 213; Bacteria - 6026; Metazoa - 414; Fungi - 276; Plants - 133; Viruses - 3; Other Eukaryotes - 4157 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56300-MONOMEREC:6.1.1.16eggNOG:COG0215eggNOG:KOG2007EMBL:AL163763EMBL:CP002686EnsemblPlants:AT3G56300
EnsemblPlants:AT3G56300.1entrez:824797Gene3D:3.40.50.620GeneID:824797Genevisible:Q9LYL3GO:GO:0004817GO:GO:0005524
GO:GO:0005829GO:GO:0006423GO:GO:0046872Gramene:AT3G56300.1gramene_pathway:6.1.1.16gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00041
hmmpanther:PTHR10890hmmpanther:PTHR10890:SF10HOGENOM:HOG000245250InParanoid:Q9LYL3InterPro:IPR009080InterPro:IPR014729InterPro:IPR015803
InterPro:IPR024909InterPro:IPR032678KEGG:00970+6.1.1.16KEGG:ath:AT3G56300KO:K01883OMA:ITDFALWPANTHER:PTHR10890
PaxDb:Q9LYL3Pfam:PF01406PhylomeDB:Q9LYL3PIR:T47747PRIDE:Q9LYL3PRINTS:PR00983PRO:PR:Q9LYL3
ProteinModelPortal:Q9LYL3Proteomes:UP000006548RefSeq:NP_191189.1SMR:Q9LYL3STRING:3702.AT3G56300.1SUPFAM:SSF47323SUPFAM:SSF52374
TAIR:AT3G56300TIGRfam:TIGR00435TIGRFAMs:TIGR00435TMHMM:TMhelixUniGene:At.34947UniProt:Q9LYL3
Coordinates (TAIR10) chr3:+:20880169..20882366
Molecular Weight (calculated) 55353.60 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.39
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEMEVEKPD LTLYNTMTQL KEVYKPMNPG KIGIYVCGIT AYDYSHIGHA RAAVSFDLLY RYLRHLGYQV TYVRNFTDVD DKAKNCGEKP LDLSNRFCEE
101: YLLDMAALQC LLPTHQPRVS DHMEQIIKMI EKIIENGCGY AVGGDVFFSV DKSPSYGQLS GQRLDHTQAG KRVAVDSRKR NPADFALRKA AKSGEPSWES
201: PWGHGRPGWH IEFDIHGGGA DLKFPHHENE IAQTCAACED SGVNYWLHNG HVTNNNVKMG KSLNNFFTIR QIAANYHPLA LRHFLMSAQY RSPLNYSVSQ
301: LESSSDALYS LSPYREEMSG DVGKTQQSAE AKEMIKKVKN ALKFINVSIS KLKKMQKKQR MSLVVSLVEV EKAVREVLDV LGLLTTLSYG ELLKDMKQKA
401: LTRAGMGEEE VLQRIEERNM ARKSKDFRRS DRIRELLAFK GIFLEDVPGD TVWRPSTPLT KPKSGLGLGM TAIVFAIVFT FLGFFFYSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)