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AT3G55470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G63220.1); Has 2395 Blast hits to 2293 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1201; Fungi - 119; Plants - 879; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INT7eggNOG:ENOG410ZBIJEMBL:AK117139EMBL:AL132975
EMBL:BT025730EMBL:CP002686EnsemblPlants:AT3G55470EnsemblPlants:AT3G55470.1
entrez:824713ExpressionAtlas:Q9M2T2Gene3D:2.60.40.150GeneID:824713
Gramene:AT3G55470.1hmmpanther:PTHR10774hmmpanther:PTHR10774:SF58HOGENOM:HOG000005983
InterPro:IPR000008OMA:KFQINSAPfam:PF00168Pfscan:PS50004
PhylomeDB:Q9M2T2PIR:T47686PROSITE:PS50004Proteomes:UP000006548
RefSeq:NP_191107.1SMART:SM00239SMR:Q9M2T2STRING:3702.AT3G55470.1
SUPFAM:SSF49562TAIR:AT3G55470UniGene:At.26631UniGene:At.35023
UniProt:Q9M2T2
Coordinates (TAIR10) chr3:+:20564356..20566092
Molecular Weight (calculated) 17317.50 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.42
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVGILEVSL ISGKGLKRSD FLGKIDPYVE IQYKGQTRKS SVAKEDGGRN PTWNDKLKWR AEFPGSGADY KLIVKVMDHD TFSSDDFIGE ATVHVKELLE
101: MGVEKGTAEL RPTKYNIVDS DLSFVGELLI GVSYSLLQDR GMDGEQFGGW KHSQVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)