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AT1G60440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pantothenate kinase 1
Curator
Summary (TAIR10)
The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4’-phosphopantothenate.
Computational
Description (TAIR10)
pantothenate kinase 1 (PANK1); FUNCTIONS IN: pantothenate kinase activity; INVOLVED IN: acetyl-CoA biosynthetic process, coenzyme A biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Fumble (InterPro:IPR011602), Eukaryotic pantothenate kinase (InterPro:IPR004567); BEST Arabidopsis thaliana protein match is: pantothenate kinase 2 (TAIR:AT4G32180.3); Has 1272 Blast hits to 1253 proteins in 425 species: Archae - 2; Bacteria - 436; Metazoa - 318; Fungi - 143; Plants - 93; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).
Protein Annotations
BioGrid:27563DNASU:842339EC:2.7.1.33eggNOG:COG5146
eggNOG:KOG2201EMBL:AC004473EMBL:AK229327EMBL:BT011005
EMBL:BT015384EMBL:CP002684EnsemblPlants:AT1G60440EnsemblPlants:AT1G60440.1
entrez:842339GeneID:842339Genevisible:O80765GO:GO:0004594
GO:GO:0005524GO:GO:0015937Gramene:AT1G60440.1gramene_pathway:2.7.1.33
gramene_pathway:COA-PWYhmmpanther:PTHR12280hmmpanther:PTHR12280:SF26HOGENOM:HOG000194691
InParanoid:O80765InterPro:IPR004567iPTMnet:O80765KEGG:00770+2.7.1.33
KEGG:ath:AT1G60440OMA:CQSFDELPaxDb:O80765Pfam:O80765
Pfam:PF03630PhylomeDB:O80765PRIDE:O80765PRO:PR:O80765
ProteinModelPortal:O80765Proteomes:UP000006548RefSeq:NP_176247.2SMR:O80765
STRING:3702.AT1G60440.1SUPFAM:SSF53067TAIR:AT1G60440tair10-symbols:ATCOAA
tair10-symbols:ATPANK1tair10-symbols:PANK1TIGRfam:TIGR00555TIGRFAMs:TIGR00555
UniGene:At.36655UniPathway:UPA00241UniProt:O80765
Coordinates (TAIR10) chr1:-:22266653..22269070
Molecular Weight (calculated) 42423.70 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.14
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPTQISHLA LDIGGTLIKL VYFSANGDYS EESRNGCSVV KGRLCFAKFE TRKIDDCLEF IRFNILHHSG VQQPNGEGHD KLYVKATGGG AFKFADLFKE
101: KLGILFDKED EMCSLVGGVN FLLKTVPREA FTYLDGQKKF VEIDHNDLYP YLLVNIGSGV SMIKVDGDGK YERISGTSLG GGTFLGLGKL LTKCKSFDEL
201: LELSHHGNNR VIDMLVGDIY GGTDYSKIGL SSTAIASSFG KAISDGKELE DYQPEDVARS LLRMISNNIG QIAYLNALRF GLKRIFFGGF FIRGLEYTMD
301: TISVAVHFWS RGEAKAMFLR HEGFLGALGA FTSYNDQSHN DLKPHHHTVQ RAILNCSGHN FRHIPVTSNL NESETIECSI NLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)