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AT3G53230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23027663 (2012): cytosol
  • PMID:23027663 (2012): nucleus nuclear envelope
  • PMID:23027663 (2012): nucleus nuclear matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATPase, AAA-type, CDC48 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink).
Protein Annotations
BioGrid:9806eggNOG:COG0464eggNOG:KOG0730EMBL:AK228801
EMBL:AL132958EMBL:CP002686EnsemblPlants:AT3G53230EnsemblPlants:AT3G53230.1
entrez:824489Gene3D:3.10.330.10Gene3D:3.40.50.300GeneID:824489
Genevisible:Q9SCN8GO:GO:0005524GO:GO:0005654GO:GO:0005730
GO:GO:0005794GO:GO:0005829GO:GO:0005856GO:GO:0005886
GO:GO:0007049GO:GO:0009524GO:GO:0015031GO:GO:0016787
GO:GO:0045732GO:GO:0046686GO:GO:0051301Gramene:AT3G53230.1
hmmpanther:PTHR23077hmmpanther:PTHR23077:SF82HOGENOM:HOG000223224InParanoid:Q9SCN8
InterPro:IPR003338InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960
InterPro:IPR004201InterPro:IPR005938InterPro:IPR009010InterPro:IPR027417
InterPro:IPR029067iPTMnet:Q9SCN8KEGG:ath:AT3G53230KO:K13525
OMA:ASETVIHPaxDb:Q9SCN8Pfam:PF00004Pfam:PF02359
Pfam:PF02933Pfam:Q9SCN8PhylomeDB:Q9SCN8PIR:T46169
PRIDE:Q9SCN8PRO:PR:Q9SCN8PROSITE:PS00674ProteinModelPortal:Q9SCN8
Proteomes:UP000006548Reactome:R-ATH-110320Reactome:R-ATH-3371511Reactome:R-ATH-5358346
RefSeq:NP_190891.1scanprosite:PS00674SMART:SM00382SMART:SM01072
SMART:SM01073SMR:Q9SCN8STRING:3702.AT3G53230.1SUPFAM:SSF50692
SUPFAM:SSF52540SUPFAM:SSF54585TAIR:AT3G53230TIGRfam:TIGR01243
TIGRFAMs:TIGR01243UniGene:At.23168UniProt:Q9SCN8
Coordinates (TAIR10) chr3:+:19723416..19726489
Molecular Weight (calculated) 90345.50 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.39
Length 815 amino acids
Sequence (TAIR10)
(BLAST)
001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)