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AT1G31280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Argonaute family protein
Curator
Summary (TAIR10)
An Argonaute gene
Computational
Description (TAIR10)
argonaute 2 (AGO2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: ARGONAUTE 3 (TAIR:AT1G31290.1); Has 30240 Blast hits to 14140 proteins in 1171 species: Archae - 11; Bacteria - 7749; Metazoa - 10383; Fungi - 2602; Plants - 5076; Viruses - 357; Other Eukaryotes - 4062 (source: NCBI BLink).
Protein Annotations
BioGrid:25251eggNOG:ENOG410XP07eggNOG:KOG1041EMBL:AC007654
EMBL:AK118463EMBL:BT005914EMBL:CP002684EnsemblPlants:AT1G31280
EnsemblPlants:AT1G31280.1entrez:840016Gene3D:3.30.420.10GeneID:840016
Genevisible:Q9SHF3GO:GO:0006351GO:GO:0006355GO:GO:0006417
GO:GO:0019048GO:GO:0030529GO:GO:0031047GO:GO:0035197
GO:GO:0042742GO:GO:0051607Gramene:AT1G31280.1hmmpanther:PTHR22891
hmmpanther:PTHR22891:SF4HOGENOM:HOG000116043InParanoid:Q9SHF3IntAct:Q9SHF3
InterPro:IPR003100InterPro:IPR003165InterPro:IPR012337InterPro:IPR014811
InterPro:IPR032472InterPro:IPR032474iPTMnet:Q9SHF3KEGG:ath:AT1G31280
KO:K11593OMA:CLELIGVPaxDb:Q9SHF3PDB:4G0M
PDBsum:4G0MPfam:PF02170Pfam:PF02171Pfam:PF08699
Pfam:PF16486Pfam:PF16488Pfam:Q9SHF3Pfscan:PS50821
Pfscan:PS50822PhylomeDB:Q9SHF3PIR:H86438PRIDE:Q9SHF3
PRO:PR:Q9SHF3PROSITE:PS50821PROSITE:PS50822ProteinModelPortal:Q9SHF3
Proteomes:UP000006548Reactome:R-ATH-426486Reactome:R-ATH-426496Reactome:R-ATH-5578749
RefSeq:NP_174413.2SMART:SM00949SMART:SM00950SMART:SM01163
SMR:Q9SHF3STRING:3702.AT1G31280.1SUPFAM:SSF101690SUPFAM:SSF53098
TAIR:AT1G31280tair10-symbols:AGO2UniGene:At.40380UniProt:Q9SHF3
Coordinates (TAIR10) chr1:+:11181777..11185112
Molecular Weight (calculated) 113430.00 Da
IEP (calculated) 9.97
GRAVY (calculated) -0.56
Length 1014 amino acids
Sequence (TAIR10)
(BLAST)
0001: MERGGYRGGR GDGRGRGGRG YGGGGGGGEQ GRDRGYGGGE QGRGRGSERG GGNRGQGRGE QQDFRSQSQR GPPPGHGGRG TTQFQQPRPQ VAPQPSQAPA
0101: SYAGSVGGVA GRGAWGRKPQ VPSDSASPST STTVVSEPVR VAEVMNLKPS VQVATSDRKE PMKRPDRGGV VAVRRVNLYV NHYKVNFNPE SVIRHYDVEI
0201: KGEIPTKKVS RFELAMVRDK VFTDNPDEFP LAMTAYDGQK NIFSAVELPT GSYKVEYPKT EEMRGRSYTF TIKQVNVLKL GDLKEYMTGR SSFNPRDVLQ
0301: GMDVVMKEHP SKCMITVGKS FFTRETEPDE DFRFGVIAAK GYRHTLKPTA QGLSLCLDYS VLAFRKAMSV IEYLKLYFNW SDMRQFRRRD VEEELIGLKV
0401: TVNHRKNKQK LTIVGLSMQN TKDIKFDLID QEGNEPPRKT SIVEYFRIKY GRHIVHKDIP CLDLGKNGRQ NFVPMEFCDL VEGQIYPKDN LDKDSALWLK
0501: KLSLVNPQQR QRNIDKMIKA RNGPSGGEII GNFGLKVDTN MTPVEGRVLK APSLKLAERG RVVREEPNPR QNNQWNLMKK GVTRGSIVKH WAVLDFTASE
0601: RFNKMPNDFV DNLIDRCWRL GMQMEAPIVY KTSRMETLSN GNAIEELLRS VIDEASRKHG GARPTLVLCA MSRKDDGYKT LKWIAETKLG LVTQCFLTGP
0701: ATKGGDQYRA NLALKMNAKV GGSNVELMDT FSFFKKEDEV MFIGADVNHP AARDKMSPSI VAVVGTLNWP EANRYAARVI AQPHRKEEIQ GFGDACLELV
0801: KAHVQATGKR PNKIVIFRDG VSDAQFDMVL NVELLDVKLT FEKNGYNPKI TVIVAQKRHQ TRFFPATNND GSDKGNVPSG TVVDTKVIHP YEYDFYLCSH
0901: HGGIGTSKPT HYYTLWDELG FTSDQVQKLI FEMCFTFTRC TKPVSLVPPV YYADMVAFRG RMYHEASSRE KNFKQPRGAS TSAASLASSL SSLTIEDKAI
1001: FKLHAELENV MFFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)