AT3G52170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA binding | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA binding; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G58210.4); Has 240 Blast hits to 221 proteins in 88 species: Archae - 6; Bacteria - 92; Metazoa - 40; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19347039..19349099 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54031.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHSLKTTCVG QIFALAKPHD SVGKRTRNRI PKEERKTLVE SFIKKHQKLN NGSFPSLSLT HKEVGGSFYT IREIVREIIQ ENRVLGPGDL LLEGNGSVQD 101: QSLSSSILMD PVPPLSLSPN GFHSGSYQSL DFSSESPEGN VNGSQVCLDN CREVSGSQLL KEDIGLVHQS MDSTDISMTQ LATSCSEDND IKSNAGLQNR 201: METVCDSVDT KPQDKRLDVD NKDEGFEELR FMESDGTKPV NNDDRVNDAG AAMTEIKNGL GTIDMSAETV VETFPLKSVT STMDSPDAQP TELNKVCEGG 301: KGTETEVEAD RSTVNHVDLG EISSSTSSAV LEDIGTEVIV GQIPNHISVP MEKKVGEEIV NSASVDVECA DAKETVVVNG VIGNVHETKE FSNGTLTAEQ 401: KMPTSSTESG SRKNDRAKVD TVSSYAGNEV ASVEKKATME KGKIDAPDSS SSQKENNATL NRIKPESWKG ESNMGRQETN PLLAVLKSFV TAFVKFWSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)