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AT3G49710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 44619 Blast hits to 14217 proteins in 272 species: Archae - 0; Bacteria - 17; Metazoa - 134; Fungi - 114; Plants - 43678; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132965EMBL:CP002686
EnsemblPlants:AT3G49710EnsemblPlants:AT3G49710.1entrez:824133Gene3D:1.25.40.10
GeneID:824133Genevisible:Q9M2Y7GO:GO:0008270Gramene:AT3G49710.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF720HOGENOM:HOG000237570InParanoid:Q9M2Y7
InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT3G49710
OMA:VMLANMYPaxDb:Q9M2Y7Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfam:Q9M2Y7Pfscan:PS51375PhylomeDB:Q9M2Y7
PIR:T46037PRIDE:Q9M2Y7PRO:PR:Q9M2Y7PROSITE:PS51375
ProteinModelPortal:Q9M2Y7Proteomes:UP000006548RefSeq:NP_190540.1SMR:Q9M2Y7
STRING:3702.AT3G49710.1SUPFAM:SSF48452TAIR:AT3G49710TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.22445UniGene:At.53859UniProt:Q9M2Y7
Coordinates (TAIR10) chr3:+:18437845..18440010
Molecular Weight (calculated) 81344.30 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.20
Length 721 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQTPWKFKT FRDLLLKSVA ERDLFTGKSL HALYVKSIVA SSTYLSNHFV NLYSKCGRLS YARAAFYSTE EPNVFSYNVI VKAYAKDSKI HIARQLFDEI
101: PQPDTVSYNT LISGYADARE TFAAMVLFKR MRKLGFEVDG FTLSGLIAAC CDRVDLIKQL HCFSVSGGFD SYSSVNNAFV TYYSKGGLLR EAVSVFYGMD
201: ELRDEVSWNS MIVAYGQHKE GAKALALYKE MIFKGFKIDM FTLASVLNAL TSLDHLIGGR QFHGKLIKAG FHQNSHVGSG LIDFYSKCGG CDGMYDSEKV
301: FQEILSPDLV VWNTMISGYS MNEELSEEAV KSFRQMQRIG HRPDDCSFVC VTSACSNLSS PSQCKQIHGL AIKSHIPSNR ISVNNALISL YYKSGNLQDA
401: RWVFDRMPEL NAVSFNCMIK GYAQHGHGTE ALLLYQRMLD SGIAPNKITF VAVLSACAHC GKVDEGQEYF NTMKETFKIE PEAEHYSCMI DLLGRAGKLE
501: EAERFIDAMP YKPGSVAWAA LLGACRKHKN MALAERAANE LMVMQPLAAT PYVMLANMYA DARKWEEMAS VRKSMRGKRI RKKPGCSWIE VKKKKHVFVA
601: EDWSHPMIRE VNEYLEEMMK KMKKVGYVMD KKWAMVKEDE AGEGDEEMRL GHHSEKLAVA FGLMSTRDGE ELVVVKNLRI CGDCHNAIKF MSAVAGREII
701: VRDNLRFHCF KDGKCSCGDY W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)