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AT3G26000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.872
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribonuclease inhibitor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease inhibitor; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G27290.1); Has 103 Blast hits to 103 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:7528eggNOG:ENOG410IK4YeggNOG:ENOG410YFZ3EMBL:AB023041EMBL:AY058077EMBL:AY140009EMBL:BT015945
EMBL:CP002686EnsemblPlants:AT3G26000EnsemblPlants:AT3G26000.1entrez:822197Gene3D:3.80.10.10GeneID:822197Genevisible:Q9LU91
GO:GO:0016567Gramene:AT3G26000.1HOGENOM:HOG000240873InParanoid:Q9LU91IntAct:Q9LU91InterPro:IPR001810InterPro:IPR032675
KEGG:ath:AT3G26000OMA:SHRPIFPPaxDb:Q9LU91Pfam:Q9LU91PhylomeDB:Q9LU91PRIDE:Q9LU91PRO:PR:Q9LU91
ProteinModelPortal:Q9LU91Proteomes:UP000006548RefSeq:NP_566787.1SUPFAM:SSF81383TAIR:AT3G26000UniGene:At.23470UniGene:At.37291
UniPathway:UPA00143UniProt:Q9LU91
Coordinates (TAIR10) chr3:-:9507042..9508542
Molecular Weight (calculated) 50545.90 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.32
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)