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AT3G20560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PDI-like 5-3
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).
Computational
Description (TAIR10)
PDI-like 5-3 (PDIL5-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Thioredoxin protein with domain of unknown function (DUF1692) (TAIR:AT1G50950.1); Has 5147 Blast hits to 3670 proteins in 375 species: Archae - 8; Bacteria - 112; Metazoa - 2494; Fungi - 904; Plants - 886; Viruses - 3; Other Eukaryotes - 740 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7XeggNOG:KOG2667EMBL:AP000410EMBL:AY050453
EMBL:CP002686EnsemblPlants:AT3G20560EnsemblPlants:AT3G20560.1entrez:821603
Gene3D:3.40.30.10GeneID:821603Genevisible:Q9LJU2GO:GO:0003756
GO:GO:0005623GO:GO:0006457GO:GO:0016021GO:GO:0045454
Gramene:AT3G20560.1hmmpanther:PTHR10984hmmpanther:PTHR10984:SF37HOGENOM:HOG000265256
InParanoid:Q9LJU2InterPro:IPR012336InterPro:IPR012936InterPro:IPR013766
iPTMnet:Q9LJU2KEGG:ath:AT3G20560OMA:YLEVNTTPaxDb:Q9LJU2
Pfam:PF00085Pfam:PF07970Pfam:PF13850Pfam:Q9LJU2
Pfscan:PS51352PhylomeDB:Q9LJU2PRIDE:Q9LJU2PRO:PR:Q9LJU2
PROSITE:PS51352ProteinModelPortal:Q9LJU2Proteomes:UP000006548RefSeq:NP_566664.1
SMR:Q9LJU2STRING:3702.AT3G20560.1SUPFAM:SSF52833TAIR:AT3G20560
tair10-symbols:ATPDI12tair10-symbols:ATPDIL5-3tair10-symbols:PDI12tair10-symbols:PDIL5-3
TMHMM:TMhelixUniGene:At.48682UniGene:At.5498UniProt:Q9LJU2
Coordinates (TAIR10) chr3:+:7182182..7186390
Molecular Weight (calculated) 53998.50 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.20
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSSTKLKSV DFYRKIPRDL TEASLSGAGL SIVAALFMMF LFGMELSSYL EVNTTTAVIV DKSSDGDFLR IDFNISFPAL SCEFASVDVS DVLGTNRLNI
101: TKTVRKFPID PHLRSTGAEF HSGLALHNIN HGEETKEEFP DGAIPLTSAS FEALSHHFPI LVVNFNAPWC YWSNRLKPSW EKAANIIKQR YDPEADGRVL
201: LGNVDCTEEP ALCKRNHIQG YPSIRIFRKG SDLREDHGHH EHESYYGDRD TDSIVKMVEG LVAPIHPETH KVALDGKSND TVKHLKKGPV TGGCRVEGYV
301: RVKKVPGNLV ISAHSGAHSF DSSQMNMSHV VSHFSFGRMI SPRLLTDMKR LLPYLGLSHD RLDGKAFINQ HEFGANVTIE HYLQTVKTEV ITRRSGQEHS
401: LIEEYEYTAH SSVAQTYYLP VAKFHFELSP MQILITENPK SFSHFITNLC AIIGGVFTVA GILDSIFHNT VRLVKKVELG KNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)