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AT1G09580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.769
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1); Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 509; Plants - 239; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
BioGrid:22726eggNOG:ENOG410XTBQeggNOG:KOG1691EMBL:AC003970
EMBL:BT010830EMBL:CP002684EnsemblPlants:AT1G09580EnsemblPlants:AT1G09580.1
entrez:837485GeneID:837485GO:GO:0005789GO:GO:0015031
GO:GO:0016021GO:GO:0016192Gramene:AT1G09580.1hmmpanther:PTHR22811
hmmpanther:PTHR22811:SF68HOGENOM:HOG000160227InParanoid:Q6IDL4InterPro:IPR009038
InterPro:IPR015720KEGG:ath:AT1G09580ncoils:CoilOMA:VSINIDW
PANTHER:PTHR22811PaxDb:Q6IDL4Pfam:PF01105Pfam:Q6IDL4
Pfscan:PS50866PhylomeDB:Q6IDL4PRIDE:Q6IDL4PRO:PR:Q6IDL4
PROSITE:PS50866Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_172429.1
SMART:SM01190STRING:3702.AT1G09580.1TAIR:AT1G09580TMHMM:TMhelix
UniGene:At.42218UniProt:Q6IDL4
Coordinates (TAIR10) chr1:+:3104657..3106092
Molecular Weight (calculated) 24608.90 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.08
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)