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AT3G19430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : late embryogenesis abundant protein-related / LEA protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
late embryogenesis abundant protein-related / LEA protein-related; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 407828 Blast hits to 124211 proteins in 3571 species: Archae - 1492; Bacteria - 100012; Metazoa - 145570; Fungi - 58500; Plants - 39690; Viruses - 10531; Other Eukaryotes - 52033 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEAPeggNOG:ENOG410Y914EMBL:CP002686EnsemblPlants:AT3G19430EnsemblPlants:AT3G19430.1entrez:821477GeneID:821477
Gramene:AT3G19430.1hmmpanther:PTHR31656hmmpanther:PTHR31656:SF0InParanoid:F4JB74InterPro:IPR009646KEGG:ath:AT3G19430OMA:DSCHVEC
PaxDb:F4JB74Pfam:PF06830PRIDE:F4JB74ProteinModelPortal:F4JB74Proteomes:UP000006548RefSeq:NP_188574.2TAIR:AT3G19430
UniGene:At.5711UniProt:F4JB74
Coordinates (TAIR10) chr3:-:6736382..6738330
Molecular Weight (calculated) 58570.10 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.49
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MADTPPGIAK NPSHATCKIK KYKHCYNLEH VCPKFCPDSC HVECASCKPI CGPPSPGDDG GGDDSGGDDG GYTPPAPVPP VSPPPPTPSV PSPTPPVSPP
101: PPTPTPSVPS PTPPVSPPPP TPTPSVPSPT PPVSPPPPTP TPSVPSPTPP VSPPPPTPTP SVPSPTPPVP TDPMPSPPPP VSPPPPTPTP SVPSPPDVTP
201: TPPTPSVPSP PDVTPTPPTP SVPSPPDVTP TPPTPPSVPT PSGSPPYVPP PSDEEEAAGA KRVRCKKQRS PCYGVEYTCP ADCPRSCQVD CVTCKPVCNC
301: DKPGSVCQDP RFIGGDGLTF YFHGKKDSNF CLISDPNLHI NAHFIGKRRA GMARDFTWVQ SIAILFGTHR LYVGALKTAT WDDSVDRIAV SFDGNVISLP
401: QLDGARWTSS PGVYPEVSVK RVNTDTNNLE VEVEGLLKIT ARVVPITMED SRIHGYDVKE DDCLAHLDLG FKFQDLSDNV DGVLGQTYRS NYVSRVKIGV
501: HMPVMGGDRE FQTTGLFAPD CSAARFTGNG DSNNGRSKLE LPEMSCASGL GGKGVVCKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)