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AT3G15270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 5
Curator
Summary (TAIR10)
Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 5 (SPL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 4 (TAIR:AT1G53160.1); Has 839 Blast hits to 838 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 839; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6092eggNOG:ENOG410J055eggNOG:ENOG410YKCIEMBL:AJ011609
EMBL:AJ011610EMBL:AJ242960EMBL:AK118611EMBL:AP000413
EMBL:BT003714EMBL:CP002686EnsemblPlants:AT3G15270EnsemblPlants:AT3G15270.1
entrez:820758Gene3D:4.10.1100.10GeneID:820758Genevisible:Q9S758
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0006355GO:GO:0010321GO:GO:0046872
Gramene:AT3G15270.1hmmpanther:PTHR31251hmmpanther:PTHR31251:SF9HOGENOM:HOG000005763
InParanoid:Q9S758InterPro:IPR004333KEGG:ath:AT3G15270OMA:EMENGMD
PaxDb:Q9S758Pfam:PF03110Pfam:Q9S758Pfscan:PS51141
PhylomeDB:Q9S758PIR:T52567PIR:T52607PRIDE:Q9S758
PRO:PR:Q9S758PROSITE:PS51141ProteinModelPortal:Q9S758Proteomes:UP000006548
RefSeq:NP_188145.1SMR:Q9S758STRING:3702.AT3G15270.1SUPFAM:SSF103612
TAIR:AT3G15270tair10-symbols:SPL5UniGene:At.28162UniGene:At.64997
UniProt:Q9S758
Coordinates (TAIR10) chr3:-:5140624..5141256
Molecular Weight (calculated) 20992.80 Da
IEP (calculated) 10.36
GRAVY (calculated) -1.24
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)