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AT3G12170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: J-domain protein 6 (TAIR:AT5G06910.1); Has 23895 Blast hits to 23888 proteins in 3317 species: Archae - 171; Bacteria - 9423; Metazoa - 4258; Fungi - 2263; Plants - 2420; Viruses - 67; Other Eukaryotes - 5293 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:KOG0719EMBL:AC069472EMBL:AK175310
EMBL:AP002063EMBL:BT010419EMBL:CP002686EnsemblPlants:AT3G12170
EnsemblPlants:AT3G12170.1entrez:820394Gene3D:1.10.287.110GeneID:820394
Gramene:AT3G12170.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF276HOGENOM:HOG000165297
IntAct:Q9LH49InterPro:IPR001623KEGG:ath:AT3G12170KO:K09529
ncoils:CoilOMA:NYLMNHVPfam:PF00226Pfscan:PS50076
PhylomeDB:Q9LH49PRINTS:PR00625PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_187824.1SMART:SM00271SMR:Q9LH49STRING:3702.AT3G12170.1
SUPFAM:SSF46565TAIR:AT3G12170UniGene:At.39636UniProt:Q9LH49
Coordinates (TAIR10) chr3:+:3881021..3882655
Molecular Weight (calculated) 30153.30 Da
IEP (calculated) 6.34
GRAVY (calculated) -1.08
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MENDGRSNEK NLYEVLGVEA TASPQEIRKA YHKLALRLHP DKNKDDEDAK EKFQQLQKVI SILGDEEKRA VYDQTGSVDD ADLSGDVVDN LRDFFKAMYK
101: KVTEEDIEEF EANYRGSESE KNDLIELYNK FKGKMSRLFC SMLCSNPKLD SHRFKDIIDE AIAAGEVKST KAYKKWAKEI AEMEPPTNPQ KMRRKAAKAA
201: DKDLYAVMSQ RGDERKEKFD SMFSSLVSRY GSNADSEPNE EEFEAAQRKV ESRRSSKKSR KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)