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AT3G07565.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3755)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G10820.2); Has 164 Blast hits to 162 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH49eggNOG:ENOG4111MBVEMBL:BT002733EMBL:CP002686EnsemblPlants:AT3G07565EnsemblPlants:AT3G07565.1entrez:819946
ExpressionAtlas:Q84WV3GeneID:819946GO:GO:0003677Gramene:AT3G07565.1hmmpanther:PTHR14000HOGENOM:HOG000239279InterPro:IPR009057
InterPro:IPR022228Pfam:PF12579PhylomeDB:Q84WV3Proteomes:UP000006548RefSeq:NP_187413.1STRING:3702.AT3G07565.4SUPFAM:SSF46689
TAIR:AT3G07565UniGene:At.40332UniGene:At.63525UniProt:Q84WV3
Coordinates (TAIR10) chr3:+:2413823..2415872
Molecular Weight (calculated) 27994.90 Da
IEP (calculated) 9.06
GRAVY (calculated) -0.68
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASANPSGN NQEGSSATQK VSSSSAAAAN GAAVNSVDNG GNTGAAADNS QTIGALRHNP GISTDWTLEE QSLLEDLLVK YATEPSVFRY AKIAMKMKDK
101: TVRDVALRCR WMTKKENGKR RKEDHSSRKS KDKKEKATDS SAKSSSHLNV HPNGPSYAPP MMPIDTDDGI SYKAIGGVSG DLLEQNAQMF NQLSTNFSAF
201: QLHENVNILC KARDNILAIL NDLNDMPEVM KQMPPLPVKL NEELANSILP RPSHQRKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)