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AT1G55300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TBP-associated factor 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 7 (TAF7); FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII55 protein, conserved region (InterPro:IPR006751); Has 378 Blast hits to 378 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 92; Plants - 58; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
BioGrid:27200eggNOG:COG5414eggNOG:KOG4011EMBL:AC027034
EMBL:AK316930EMBL:AK316996EMBL:AY463622EMBL:BT011002
EMBL:BT015099EMBL:CP002684EnsemblPlants:AT1G55300EnsemblPlants:AT1G55300.1
EnsemblPlants:AT1G55300.2entrez:841975ExpressionAtlas:B9DG24GeneID:841975
Genevisible:B9DG24GO:GO:0003713GO:GO:0005669GO:GO:0006357
GO:GO:0008134GO:GO:0035035GO:GO:0044212GO:GO:0051123
hmmpanther:PTHR12228HOGENOM:HOG000005749InParanoid:B9DG24IntAct:B9DG24
InterPro:IPR006751KEGG:ath:AT1G55300KO:K03132PaxDb:B9DG24
Pfam:PF04658PhylomeDB:B9DG24PIR:A96595PRIDE:B9DG24
PRO:PR:B9DG24ProteinModelPortal:B9DG24Proteomes:UP000006548RefSeq:NP_001031194.1
RefSeq:NP_175926.1SMART:SM01370SMR:B9DG24STRING:3702.AT1G55300.2
TAIR:AT1G55300tair10-symbols:TAF7UniGene:At.37085UniProt:Q9C8A0
Coordinates (TAIR10) chr1:-:20628170..20629490
Molecular Weight (calculated) 22492.00 Da
IEP (calculated) 4.11
GRAVY (calculated) -0.76
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEQFILRVP PSVSERIDRL LSEDASTSDE IPLDLFFSED GRNGTFMIGN DEFPASLLDL PAVVESFKTY DDCALVKTAD IGQMIMVREP GDPAPNTVEY
101: RHGLTPPMKD ARKRRFRREP DLNPELVQRV ERDLLNILSG GTVENVHEQE EPATNENASN ASKKVSSSSP TPVEKPEAPE TGTSNPTGVE PERSESEDSD
201: DSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)