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AT3G07390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:14506206 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : auxin-responsive family protein
Curator
Summary (TAIR10)
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational
Description (TAIR10)
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISTTeggNOG:ENOG410ZM7EEMBL:AC009853EMBL:AF055850
EMBL:AY039908EMBL:AY077679EMBL:CP002686EnsemblPlants:AT3G07390
EnsemblPlants:AT3G07390.1entrez:819927GeneID:819927Genevisible:Q94BT2
GO:GO:0005886GO:GO:0009734GO:GO:0031225GO:GO:0046872
GO:GO:0055114Gramene:AT3G07390.1hmmpanther:PTHR23130hmmpanther:PTHR23130:SF80
HOGENOM:HOG000239821InParanoid:Q94BT2InterPro:IPR005018KEGG:ath:AT3G07390
PaxDb:Q94BT2Pfam:PF04526Pfam:Q94BT2Pfscan:PS50836
PhylomeDB:Q94BT2PIR:T51337PRIDE:Q94BT2PRO:PR:Q94BT2
PROSITE:PS50836ProteinModelPortal:Q94BT2Proteomes:UP000006548RefSeq:NP_566306.3
STRING:3702.AT3G07390.1TAIR:AT3G07390tair10-symbols:AIR12UniGene:At.48629
UniProt:Q94BT2
Coordinates (TAIR10) chr3:+:2365452..2366273
Molecular Weight (calculated) 27928.00 Da
IEP (calculated) 8.32
GRAVY (calculated) 0.14
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLCLKIPLI KHQTTPEQNS AMASSSSSLL ILAVACFVSL ISPAISQQAC KSQNLNSAGP FDSCEDLPVL NSYLHYTYNS SNSSLSVAFV ATPSQANGGW
101: VAWAINPTGT KMAGSQAFLA YRSGGGAAPV VKTYNISSYS SLVEGKLAFD FWNLRAESLS GGRIAIFTTV KVPAGADSVN QVWQIGGNVT NGRPGVHPFG
201: PDNLGSHRVL SFTEDAAPGS APSPGSAPAP GTSGSTTPGT AAGGPGNAGS LTRNVNFGVN LGILVLLGSI FIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)