AT2G46620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.826 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 14567 Blast hits to 13858 proteins in 2196 species: Archae - 1075; Bacteria - 5270; Metazoa - 1990; Fungi - 1931; Plants - 1602; Viruses - 18; Other Eukaryotes - 2681 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:19139071..19140546 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55913.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGILWDSFLL LLVSTFALFL VRILLFKTGL IYMVKLWRRK IIDWFHVYQF YKVPEFNDNV QENHLYQKVY MYLNSLSSIE NSDFTNLFTG KKSNEIILRL 101: DRNQVVGDEF LGARVCWING EDEDGARNFV LKIRKADKRR ILGSYLQHIH TVSDELEQRN TELKLFINVG IDDHLNKKKK KNGRWRSIPF DHPCTFDNIA 201: METDLKNKVK SDLESFLKGK QYYNRLGRVW KRSYLLYGPS GTGKSSFVAA MANFLDYDVY DIDLSKVVDD SDLKMLLLQT RGKSVIVIED LDRHLSTKST 301: AVNLSGILNF TDSILSSCTA DERIMVFTMT GKEQIDPAML RPGRVDVHIH FPLCDFTAFK TLANNYLGVK EHKLFSQVEG IFQNGASLSP AEIGELMIAN 401: RNSPTRALKH VINALQTDGD RRGTGRRLLL ENGSRKSTSE DVSDDMSGSL CGGGGGSSPA VKEFRKLYGL LRIKSSRKSG SFDVAREMRD G |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)