AT2G44650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chloroplast chaperonin 10 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chloroplast chaperonin 10 (CHL-CPN10); FUNCTIONS IN: chaperone binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT3G60210.1); Has 1290 Blast hits to 1286 proteins in 416 species: Archae - 0; Bacteria - 806; Metazoa - 57; Fungi - 4; Plants - 146; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18419521..18420510 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 15050.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 139 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASTFVCSLP NPFFAFPVKA TTPSTANHTL LGSRRGCLRI KAISTKWEPT KVVPQADRVL VRLEDLPIKS SGGVLLPKAA VKFERYLTGE IISVGSEVGQ 101: QVGPGKRVLF SDVSAYEVDL GTDARHCFCK ESDLLALVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)