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AT2G42300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G57800.2); Has 2090 Blast hits to 2084 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 16; Plants - 2063; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4168eggNOG:ENOG410IPZEeggNOG:ENOG410YEV1EMBL:AC005956
EMBL:AF488583EMBL:AK175584EMBL:AK176019EMBL:AK176634
EMBL:AY065411EMBL:AY096521EMBL:CP002685EnsemblPlants:AT2G42300
EnsemblPlants:AT2G42300.1entrez:818831ExpressionAtlas:Q8VZ02Gene3D:4.10.280.10
GeneID:818831Genevisible:Q8VZ02GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355hmmpanther:PTHR12565
hmmpanther:PTHR12565:SF112HOGENOM:HOG000037005InParanoid:Q8VZ02InterPro:IPR011598
ncoils:CoilOMA:PEWGREEPaxDb:Q8VZ02Pfam:PF00010
Pfam:Q8VZ02Pfscan:PS50888PhylomeDB:Q8VZ02PIR:C84852
PRIDE:Q8VZ02PRO:PR:Q8VZ02PROSITE:PS50888ProteinModelPortal:Q8VZ02
Proteomes:UP000006548RefSeq:NP_850368.1SMART:SM00353SMR:Q8VZ02
STRING:3702.AT2G42300.1SUPFAM:SSF47459TAIR:AT2G42300UniGene:At.28495
UniProt:Q8VZ02
Coordinates (TAIR10) chr2:+:17621542..17624635
Molecular Weight (calculated) 36194.50 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.59
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)