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AT2G41200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.369
plasma membrane 0.329
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2ENeggNOG:ENOG410YT39EMBL:AC004261EMBL:AY088518
EMBL:CP002685EnsemblPlants:AT2G41200EnsemblPlants:AT2G41200.1entrez:818719
GeneID:818719GO:GO:0016021Gramene:AT2G41200.1hmmpanther:PTHR37216
hmmpanther:PTHR37216:SF1HOGENOM:HOG000115136KEGG:ath:AT2G41200OMA:NRIAPTS
PhylomeDB:O80667PIR:T02099Proteomes:UP000006548RefSeq:NP_030665.1
TAIR:AT2G41200TMHMM:TMhelixUniGene:At.42862UniProt:O80667
Coordinates (TAIR10) chr2:+:17171657..17172929
Molecular Weight (calculated) 17858.70 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.10
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQALNTAKG KGEVDAKDLE AMAENCYRKR LEEKNDDQEW SFGDFYRIVA EAVEEINRRL GGTQLKVPSV EKLQQAYEIH NLGQGKKLSK DEFQKLLQEV
101: LIGVGFTGVG GVKEFLLFIF GVPAIAVFIK NRIAPTSVPN DLFIPAITSA TVFLLAKLNK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)