AT2G27900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11877654..11885238 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124922.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||
| Length | 1124 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQPNLFFPFG SVLGNPFLFN GGGDLNELGS GAAFESSRVF FLLPFLLSQG TGVMDLSKVG EKFLSSVKSA TSLGLLPSPS ISDRPEIPAR AAAAAAVARA 0101: LAGLPSDQRL SISSTATELN SIYGNRPLPQ QVEELEEGFY EEDFDPVRHI LENVPDDESE LAYFEKQATL RLVQLDKVAE TLSHHVMEHH EVMVKGMNLV 0201: RELEKDLKIA NVICKNGRRN LTSSMNEASR DLIVHTHSKK KQALLDMLPI LTDLRHARVM QSNLEDLVED GNYCKAFQVL SEYLQLLDSL SEFSAAQEMT 0301: RGVEVWLGRT LHKLDSLLLG VCQEFKEDSY VMVLDAYALI GDVSGLAEKI QSFFMQEVIS ETHSVLKSIV GEDNSAATQY SRLTYSDLCL QTPESKFRQC 0401: LLRTLAVLFQ LIYSYHEIMS FTPEKEAEIL VSPSLATTQM VDSVTGSSCD PQDGGLLPGS IPPCTISAEE SDGSGTSSSV QLASNIAIDE SRNSEDRVSS 0501: SESPWYYLRK ESAAFVSETL QRGRRNLWQL TTSRVSVLLS SPGASSTSIH QFLKNYEDLS IFILAGEAFC GFEVVDFREK LKGVCENYFT AFHRQSMHAL 0601: KMVLEKETWT KLSPDTVQAI NFAGLVGDGA PLIISSRSAS GSSRFPHSDK PSNSIDPSGN RSGFSYWLKS GNPFSAKLTH YREDQDYSSI NGEDHEGNDS 0701: IHDDVVNPKI RDIKRINGGS PVSEDENEDL LADFIDEDSQ LPRRSFTRSQ SRTSSSHFST NDDLTAQTGS SLCLLRSMDK YARLMQKLEI VNAEFFKGIC 0801: QLFGVFFYFV FQVFGQENTN SGGKGVSDSF NHRLKSCLSR ISQECEQWIK PHVSSSPSSS LAFPNTVHSL ADVTPASPLN TSGHLSGVSF SLKERCAAVD 0901: TVSLVARVLH KSKAHLQSML MSRNGSLVED FFGQLVGSVP DLTEHLHRTT ARILLHVNGY VDRIANSKWE IKELGMEHNG YVDLMLGEFK HYKTRLAHGG 1001: IPQEVQNLLL EYGVEIFAEM LVEGLSRIKR CTDEGRVLMS LDLQVLINGL QHFVPTKVKP KLQIVETFIK AYYLPETEYV HWARAHPEYT KAQVVGLVNL 1101: VATMKGWKRK TRLEVIEKIE SASM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)