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AT2G26380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 69641 Blast hits to 27603 proteins in 993 species: Archae - 28; Bacteria - 4622; Metazoa - 15628; Fungi - 695; Plants - 43975; Viruses - 2; Other Eukaryotes - 4691 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AC002505EMBL:CP002685
EnsemblPlants:AT2G26380EnsemblPlants:AT2G26380.1entrez:817178Gene3D:3.80.10.10
GeneID:817178Gramene:AT2G26380.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF52
HOGENOM:HOG000066206InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT2G26380OMA:TKIANINPfam:PF00560Pfam:PF08263
PhylomeDB:O48705PIR:T00971Proteomes:UP000006548RefSeq:NP_180206.1
SMR:O48705STRING:3702.AT2G26380.1SUPFAM:SSF52058TAIR:AT2G26380
UniGene:At.66247UniProt:O48705
Coordinates (TAIR10) chr2:-:11226615..11228057
Molecular Weight (calculated) 52432.00 Da
IEP (calculated) 10.02
GRAVY (calculated) 0.08
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSCSFHNFF IFTAVIFLRC LNPTAAATCH PDDEAGLLAF KSGITKDPSG ILSTWKKGTD CCSWNGVSCP NGNRVVVLTI RIESDDAGIF LSGTISPSLA
101: KLQHLEGVVF INLKNITGPF PPFLFRLPHL KYVYLENTRL SGPLPANIGA LNRLDTLTVK GNRFIGSIPS SISNLTRLNY LNLGGNLLTG TIPLGIANLK
201: LISNLNLDGN RLSGTIPDIF KSMTNLRILT LSRNRFSGKL PPSIASLAPV LAFLELGQNN LSGSIPSYLS RFVALDTLDL SKNRFSGAVP KSLAKLTKIA
301: NINLSHNLLT NPFPVLNVKN YILTLDLSYN KFHMETIPEW VTSASILGSL KLAKCGIKMS LDDWKTRQTD LYVSIDLSDN EISGSPLRFL KGAEQLREFR
401: MSGNKLRFDL RKLSFSTTLE TLDLSRNLVF GKVPARVAGL KTLNLSQNHL CGKLPVTKFP ESVFAGNDCL CGSPLSHCKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)