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AT2G25700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SKP1-like 3
Curator
Summary (TAIR10)
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3), putative, E3 ubiquitin ligase; similar to fimbriata-associated protein fap1 GI:2673868 from (Antirrhinum majus. Interacts with F-box proteins.
Computational
Description (TAIR10)
SKP1-like 3 (SK3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, seed coat, pedicel, valve; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 4 (TAIR:AT1G20140.1); Has 1425 Blast hits to 1421 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 177; Plants - 528; Viruses - 11; Other Eukaryotes - 158 (source: NCBI BLink).
Protein Annotations
BioGrid:2463eggNOG:COG5201eggNOG:KOG1724EMBL:AC006053EMBL:AY052700EMBL:AY139806EMBL:CP002685
EnsemblPlants:AT2G25700EnsemblPlants:AT2G25700.1entrez:817111GeneID:817111Genevisible:Q9SL93GO:GO:0005634GO:GO:0006511
GO:GO:0016567Gramene:AT2G25700.1hmmpanther:PTHR11165HOGENOM:HOG000172184IntAct:Q9SL93InterPro:IPR001232InterPro:IPR011333
InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT2G25700KO:K03094OMA:ENEWCENPaxDb:Q9SL93
Pfam:PF01466Pfam:PF03931Pfam:Q9SL93PhylomeDB:Q9SL93PIR:F84651PIRSF:PIRSF028729PRIDE:Q9SL93
PRO:PR:Q9SL93ProteinModelPortal:Q9SL93Proteomes:UP000006548RefSeq:NP_565604.1SMART:SM00512SMR:Q9SL93STRING:3702.AT2G25700.1
SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT2G25700tair10-symbols:ASK3tair10-symbols:SK3UniGene:At.26484UniPathway:UPA00143
UniProt:Q9SL93
Coordinates (TAIR10) chr2:-:10948914..10949551
Molecular Weight (calculated) 18365.50 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.52
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETKKMIIL KSSDGESFEV EEAVAVESQT IKHMIEDDCV DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS TENHELKTWD NDFVKVDHPT
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)