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AT2G22620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhamnogalacturonate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1); Has 306 Blast hits to 289 proteins in 68 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 87; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
CAZy:PL4eggNOG:ENOG410IGRTeggNOG:ENOG410YE12EMBL:AC006340EMBL:CP002685EnsemblPlants:AT2G22620EnsemblPlants:AT2G22620.1
entrez:816793ExpressionAtlas:Q9ZQ51Gene3D:2.60.120.260Gene3D:2.60.40.1120GeneID:816793GO:GO:0005975GO:GO:0016829
GO:GO:0030246Gramene:AT2G22620.1hmmpanther:PTHR32018hmmpanther:PTHR32018:SF7InterPro:IPR008979InterPro:IPR010325InterPro:IPR011013
InterPro:IPR013784InterPro:IPR014766InterPro:IPR029411InterPro:IPR029413OMA:VIMADENPfam:PF06045Pfam:PF14683
Pfam:PF14686PhylomeDB:Q9ZQ51PIR:G84614Proteomes:UP000006548RefSeq:NP_179847.1SUPFAM:SSF49452SUPFAM:SSF49785
SUPFAM:SSF74650TAIR:AT2G22620UniGene:At.39414UniGene:At.39416UniProt:Q9ZQ51
Coordinates (TAIR10) chr2:-:9604902..9610156
Molecular Weight (calculated) 77622.50 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.45
Length 677 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVGAPASKP GRIIVQVFLL QLLLLLQSVH SQRSQNKLNI TKPGQNIPAL TVQLRRVGHD TVVVDNGIVQ VTFSNPEGLI TGIKYHGIDN VLDDKIDDRG
101: YWDVVWYEPE KKQKTDKLEG TKFEIITQNE EQIEISFTRT WTISRRGSLV PLNVDKRYII RSGVSGLYMY GILERLEGWP DVDMDQIRIV FKLNPKKFDF
201: MAISDDRQRS MPSMADRENS KSLAYKEAVL LTNPSNPMFK GEVDDKYMYS MEDKDNNVHG WISSDPPVGF WMITPSDEFR LGGPIKQDLT SHAGPITLSM
301: FTSTHYAGKE MRMDYRNGEP WKKVFGPVLA YLNSVSPKDS TLRLWRDAKR QMAAEVKSWP YDFITSEDYP LRHQRGTLEG QFLIKDSYVS RLKIYGKFAF
401: VGLAPIGEAG SWQTESKGYQ FWTKADRRGR FIIENVRAGN YSLYAWGSGF IGDYKYEQNI TITPGSEMNV GPLVYEPPRN GPTLWEIGVP DRTAGEFYIP
501: DPYPTLMNKL YVNPLQDRFR QYGLWDRYAD LYPQNDLVYT IGVSDYRSDW FFAHVARNVG NDTYQPTTWQ IIFNLKNVNR IGRYTLRIAL ASAADSELQI
601: RINDPKSDAI FTTGFIGKDN AIARHGIHGL YRLYSIDVAG NLLSVGDNTI FLTQTRSRTP FQGIMYDYIR LESPFRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)