AT2G19660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G37620.1); Has 2127 Blast hits to 825 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 1928; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8496720..8498708 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75650.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 662 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKVEVPPIH NHPLLPFTRF SYKACKGCGY VGYIYGGYHC NELGCESVFH KECADPLPEI NHYSHPDHPL KLLINVEPLA SCSQCPSSFE NGYLCSICDF 101: KLDFRCATRL PLEFILEEST VHEHPIQLSD GTRDGFVQLC KTCKWGVFDA VHYKCNKCDL RFHVECTKLF PQASHVLHPQ HPLKLLRCEE APDYADNKCL 201: LCGNKFDGRI HHCDVCNFTI CGGCMENPPP LSVVSPTTHE HQLYLLSKPL GFTCNACGTQ ADQSPYFCLQ CNFMIHWECI DLPRVININR HDHRISYTRR 301: LGHGQNTCGV CRKKVDGFYG GYSCSKCSNY VVHSRCATDE DVWDMIELEG TPEEPEEDAP FEVIDDNTIK HFSHDHNLVI NKDGRILHES TLCKACVFQI 401: CSDAFYSCEN CDFILHQKCA NLPRKKRHVC DNLPFTLVTN DTSDETSCDL CWQSFTGFRY ECLTRMVTLD VRCGSIREPL VHQSHQHPLY FSKRSSKSCT 501: ECGKNMDLDI GSFSCDECDY SLDFKCALLP QKVKWHRYDD HPLYLSCGES SVDGEYWCEA CETKVNSKKW FYTCNDCGVI LHISCVVGDF SYYMPGSKIG 601: WEEDLVVSNT SMCRPFCYVC NSQCKLPSIV KVVSKADVVL YICSLNCYYN FNRSNNYSSS DW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)