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AT2G17720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.610
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G35810.1); Has 2424 Blast hits to 2416 proteins in 333 species: Archae - 0; Bacteria - 386; Metazoa - 1002; Fungi - 75; Plants - 404; Viruses - 17; Other Eukaryotes - 540 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G17720-MONOMEREC:1.14.11.2eggNOG:ENOG410XS5JeggNOG:KOG1591
EMBL:AK229496EMBL:AY087497EMBL:BT024854EMBL:CP002685
EnsemblPlants:AT2G17720EnsemblPlants:AT2G17720.1entrez:816281GeneID:816281
Genevisible:Q24JN5GO:GO:0000139GO:GO:0004656GO:GO:0005506
GO:GO:0005783GO:GO:0005789GO:GO:0016021GO:GO:0031418
GO:GO:0080147Gramene:AT2G17720.1hmmpanther:PTHR10869hmmpanther:PTHR10869:SF83
HOGENOM:HOG000096858InParanoid:Q24JN5InterPro:IPR005123InterPro:IPR006620
KEGG:ath:AT2G17720KO:K00472OMA:AKGKHTHPaxDb:Q24JN5
Pfam:PF03171Pfam:PF13640Pfam:Q24JN5Pfscan:PS51471
PhylomeDB:Q24JN5PIR:T08863PRIDE:Q24JN5PRO:PR:Q24JN5
PROSITE:PS51471ProteinModelPortal:Q24JN5Proteomes:UP000006548RefSeq:NP_179363.1
SMART:SM00702SMR:Q24JN5STRING:3702.AT2G17720.1TAIR:AT2G17720
TMHMM:TMhelixUniGene:At.40108UniProt:Q24JN5
Coordinates (TAIR10) chr2:+:7697513..7699174
Molecular Weight (calculated) 32692.90 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.38
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKSKQHLR YQPRKSVSRS TQAFTVLILL LVVILILLGL GILSLPNANR NSSKTNDLTN IVRKSETSSG DEEGNGERWV EVISWEPRAV VYHNFLTNEE
101: CEHLISLAKP SMVKSTVVDE KTGGSKDSRV RTSSGTFLRR GHDEVVEVIE KRISDFTFIP VENGEGLQVL HYQVGQKYEP HYDYFLDEFN TKNGGQRIAT
201: VLMYLSDVDD GGETVFPAAR GNISAVPWWN ELSKCGKEGL SVLPKKRDAL LFWNMRPDAS LDPSSLHGGC PVVKGNKWSS TKWFHVHEFK V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)