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AT1G80440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.629
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:29601eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC018849EMBL:AY065227EMBL:AY087214EMBL:AY117221
EMBL:CP002684EnsemblPlants:AT1G80440EnsemblPlants:AT1G80440.1entrez:844383Gene3D:2.130.10.80GeneID:844383Genevisible:Q9M8L2
GO:GO:0005829GO:GO:0019005GO:GO:0080037GO:GO:2000762Gramene:AT1G80440.1hmmpanther:PTHR24413hmmpanther:PTHR24413:SF93
HOGENOM:HOG000239167InParanoid:Q9M8L2InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT1G80440OMA:STWQWDQ
PaxDb:Q9M8L2Pfam:PF01344Pfam:Q9M8L2PhylomeDB:Q9M8L2PIR:B96836PRO:PR:Q9M8L2ProteinModelPortal:Q9M8L2
Proteomes:UP000006548RefSeq:NP_565238.1SMART:SM00612SMR:Q9M8L2STRING:3702.AT1G80440.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT1G80440UniGene:At.21261UniProt:Q9M8L2
Coordinates (TAIR10) chr1:+:30241763..30242827
Molecular Weight (calculated) 38815.10 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.04
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)