AT1G77460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.829 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 membrane targeting protein (InterPro:IPR018029), Armadillo (InterPro:IPR000225), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G44120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29104378..29111580 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 231446.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 2136 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLKAFLPGTQ EEETLSSLQS GKVDAKMEMD DPEKAMATVA QLIEQLHAKT SSPQDKELTT ARLLGIAKGK REARRLIGSY GQAMPLFISM LRNGTTLAKV 0101: NVASILCVLC KDKDLRLKVL LGGCIPPLLS VLKSGTMETR KAAAEAIYEV SSAGISNDHI GMKIFITEGV VPTLWDQLSL KGNQDKVVEG YVTGALRNLC 0201: GVDDGYWRLT LEGSGVDIVV SLLSSDNPNS QANAASLLAR LVLSFCDSIQ KILNSGVVKS LIQLLEQKND INVRASAADA LEALSANSDE AKKCVKDAGG 0301: VHALIEAIVA PSKECMQGKH GQSLQEHATG ALANVFGGMR HLIIYLGQVS QSPRLTEPIG DVIGALAYAL MIFKQPESSE NIFDPSVIES ILVKLLKPRD 0401: TKLIQERILE AMASLYGNSS LSCYLDDAEA KRVLIALITM ASADVRERLI ICLSGLCHDK VGIWEAIGKR EGIQLFISFL GLSSEQHQEY AVEMLKILTA 0501: QVDDSKWAVT AAGGIPPLVQ LLETGSQKAK EDAACILWNL CCHSEEIRDC VERAGGIPAF LWLLKTGGPN SQETSAKTLV KLVHTADPAT INQLLALLLG 0601: DDPTSKIQVI EVLGHVLSKA SQEDLVHRGC AANKGLRSLV ESLTSSREET KEHTASVLAD LFSSRQDICG HLATDDIINP WIKLLTNNTQ NVAKQVARAL 0701: DALSRPVKNN NNKKKSYIAE GDIKSLIKLA KNSSIESAEN AVSALANLLS DPDIAAEALA EDVVSAFTRI LADGSPEGKR NASRALHQLL KNFPVCDVLK 0801: GSAQCRFAIL SLVDSLKSID VDSADAFNIL EVVALLAKTK SGVNFSYPPW IALAEVPSSL ETLVQCLAEG HTLVQDKAIE VLSRLCSDQQ FLLSELIVSR 0901: PKSMLVLADR IVNASSLEVR VGSTALLLCA AKEKKQLITE TLDQSGFLKL LLHALVDMIK HNSTSFSLET EVQTPKGFLE KNVFQDTGSF YFPDPAKILG 1001: GTVALWLLCI LTSVDAKSKV IVMEAGGLEV LVGKLARYTS SAQAEFEDTE GIWISALLLA IMFQDDNVSF SSTTMRIIPT LAVLLGSDEL IDRYFAAHAM 1101: ASLVCTRNRG INLTIANSGA VSGIINLLGY VESEILNLVA LANEFSLVKE PDQVILQHLF EIEDVRLGST ARKSIPLLVD LLRPIPDRPG APQFAVQILI 1201: RIADGSDTNK LLMAEAGAVE ALTKYLSLSP QDSTEYAISE LLRVLFSNHE LRQNEMALSS LNQLIAVLRL GSRSARYSAA GALNELFDAE NIRNSEIACQ 1301: AVQPLMDILG SVSESEQEVA LSALIKLSSG NTSNTALLID VEGSLLENVI KILSSATASE ELKINAARLC SVVFSNKNIR TSASASGCMK PLITLMQSER 1401: SAAVEAAVFA IKILLDDEQH LELAAAHNIQ ELLVGLVSGK NYVIIEASLS ALIKLGKDRV PRKLDMVEAG IIERCLELLP GASSSLCSAV VELFRILTNS 1501: GVIARRPDVA KTVEPLFAVL LRSDLTLWGQ HSALQALVNI LEKQQTLEAF SFTPSEAIVP LISFLESSSQ AIQQLGAELL SHFLTMEDFQ QDITTQSAVV 1601: PLVRLAGIGI LSLQETAIKA LEKISASWPK AVLDAEGIFE LSKVILQEDP QPPLDLWESA AFVLSNILQY DAECFFRVEL PVLVKLLFST IESTVLLALK 1701: ALMLHEKNDA SSTVQMAELG AIDALLDLLR SHQCEEESGS LLEVIFNNPR VRELKLCKYA IAPLSQYLLD PHTRSEPGRL LAALALGDLS QHEGLSRSSG 1801: SVSACRALIS VLEEQPTEEM KVVAICALQN FVMNSRTNRR AVAEAGGVLL IQELLLSCNP EVSGQAALMV KFLFSNHTLQ EYVSNELIRS LTAALERGLW 1901: STATINIEVL RTLNVIFSNF PKLRASEAAT FCIPHLVGAL KSGVEDVQGL VLDILYLLRH SWTNMSIDVA KSQAMIAAEA IPVLQMLMKT CPPRFHDKAD 2001: SLLHCLPGCL TVNVMRANNL KQSMATTNAF CQLTIGNCPP RQTKVVSNST TPEWKEGFTW AFDVPPKGQK LHIICKSKST FGKTTLGRVT IQIDKVVTEG 2101: EYSGSLSLNH ENSKDASSRS LDIEIAWSNR TTDETH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)