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AT1G64580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G06580.1); Has 112573 Blast hits to 15264 proteins in 312 species: Archae - 7; Bacteria - 103; Metazoa - 1711; Fungi - 1794; Plants - 105295; Viruses - 0; Other Eukaryotes - 3663 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009519EMBL:AK230416
EMBL:CP002684EnsemblPlants:AT1G64580EnsemblPlants:AT1G64580.1entrez:842766
Gene3D:1.25.40.10GeneID:842766Genevisible:Q0WKZ3Gramene:AT1G64580.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF416HOGENOM:HOG000015176InParanoid:Q0WKZ3
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q0WKZ3KEGG:ath:AT1G64580
OMA:RSANVITPaxDb:Q0WKZ3Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q0WKZ3Pfscan:PS51375PhylomeDB:Q0WKZ3
PIR:C96669PRIDE:Q0WKZ3PRO:PR:Q0WKZ3PROSITE:PS51375
ProteinModelPortal:Q0WKZ3Proteomes:UP000006548RefSeq:NP_176639.2SMR:Q0WKZ3
STRING:3702.AT1G64580.1TAIR:AT1G64580TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.16570UniProt:Q0WKZ3
Coordinates (TAIR10) chr1:-:23985078..23986649
Molecular Weight (calculated) 59569.00 Da
IEP (calculated) 8.54
GRAVY (calculated) 0.01
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRLIPIAFS SSVKGFVRRH YLLLERGNNP ETSLSRSFSG ASHHHHYRER LRNELHCIKF DDAFSLFCEM LQSRPIPSIV DFTRVLTVIA KMNKFDIVIY
101: LYHKMENLGI SHDLYSFTIL IHCFCRCSRL SLALALLGKM MKLGFRPSIV TLGSLLNGFC QGNRFQEAVS LVDSMDGFGF VPNVVIYNTV INGLCKNRDL
201: NNALEVFYCM EKKGIRADAV TYNTLISGLS NSGRWTDAAR LLRDMVKRKI DPNVIFFTAL IDTFVKEGNL LEARNLYKEM IRRSVVPNVF TYNSLINGFC
301: IHGCLGDAKY MFDLMVSKGC FPDVVTYNTL ITGFCKSKRV EDGMKLFCEM TYQGLVGDAF TYNTLIHGYC QAGKLNVAQK VFNRMVDCGV SPDIVTYNIL
401: LDCLCNNGKI EKALVMVEDL QKSEMDVDII TYNIIIQGLC RTDKLKEAWC LFRSLTRKGV KPDAIAYITM ISGLCRKGLQ READKLCRRM KEDGFMPSER
501: IYDETLRDHY TSLSAELIKA AHE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)