suba logo
AT1G64040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : type one serine/threonine protein phosphatase 3
Curator
Summary (TAIR10)
Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
Computational
Description (TAIR10)
type one serine/threonine protein phosphatase 3 (TOPP3); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT4G11240.1); Has 6826 Blast hits to 6627 proteins in 481 species: Archae - 78; Bacteria - 203; Metazoa - 2409; Fungi - 1417; Plants - 984; Viruses - 0; Other Eukaryotes - 1735 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G64040-MONOMERBioGrid:27929EC:3.1.3.16eggNOG:ENOG410IN85
eggNOG:ENOG410XPVFEMBL:AC007764EMBL:AY081338EMBL:AY128830
EMBL:CP002684EMBL:M93410EnsemblPlants:AT1G64040EnsemblPlants:AT1G64040.1
entrez:842708Gene3D:3.60.21.10GeneID:842708Genevisible:P48483
GO:GO:0000164GO:GO:0004722GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0006470GO:GO:0046872Gramene:AT1G64040.1
hmmpanther:PTHR11668hmmpanther:PTHR11668:SF280HOGENOM:HOG000172697InParanoid:P48483
InterPro:IPR004843InterPro:IPR006186InterPro:IPR029052InterPro:IPR031675
KEGG:ath:AT1G64040KO:K06269OMA:ADIPDHGPaxDb:P48483
Pfam:P48483Pfam:PF00149Pfam:PF16891PhylomeDB:P48483
PIR:C96665PIR:S31087PRIDE:P48483PRINTS:PR00114
PRO:PR:P48483PROSITE:PS00125ProteinModelPortal:P48483Proteomes:UP000006548
RefSeq:NP_176587.1scanprosite:PS00125SMART:SM00156SMR:P48483
STRING:3702.AT1G64040.1SUPFAM:SSF56300TAIR:AT1G64040tair10-symbols:TOPP3
UniGene:At.309UniProt:P48483
Coordinates (TAIR10) chr1:-:23758626..23760274
Molecular Weight (calculated) 36217.30 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.32
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDSVVDDVI KRLLGAKNGK TTKQVQLTEA EIKHLCSTAK QIFLTQPNLL ELEAPIKICG DTHGQFSDLL RLFEYGGYPP AANYLFLGDY VDRGKQSVET
101: ICLLLAYKIK YKENFFLLRG NHECASINRI YGFYDECKKR YSVRVWKIFT DCFNCLPVAA LIDEKILCMH GGLSPELKHL DEIRNIPRPA DIPDHGLLCD
201: LLWSDPDKDI EGWGENDRGV SYTFGADKVE EFLQTHDLDL ICRAHQVVED GYEFFANRQL VTIFSAPNYC GEFDNAGAMM SVDDSLTCSF QILKASEKKG
301: NFGFGKNAGR RGTPPRKGGG KG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)