AT3G62130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G26600.1); Has 4302 Blast hits to 4302 proteins in 1284 species: Archae - 105; Bacteria - 2583; Metazoa - 32; Fungi - 216; Plants - 120; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23004994..23006358 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50694.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 454 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAGERRNGD SMSHNHRAPK KPRLAGLLTE SDIDSEFAHH QTGVARINNG SFGCCPGSVL EAQREWQLRY LRQPDEFYFN GLRRGLLASR TVISDLINAD 101: DVDEVSLVDN ATTAAAIVLQ KVGRCFSEGK YKKEDTVVMF HCAFQSVKKS IQAYVSRVGG STVEVRLPFP VNSNEEIISK FREGLEKGRA NGRTVRLAII 201: DHITSMPCVL MPVRELVKIC REEGVEQVFV DAAHAIGSVK VDVKEIGADY YVSNLHKWFF CPPSIAFFYC KKRGSESDVH HPVVSHEFGN GLPIESAWIG 301: TRDYSSQLVV PSVMEFVNRF EGGMEGIMMK NHDEAVRMGL MLADAWGTNL GSPPEMCVGM VMIGLPSKLC VGSDEDAIKL RSYLRVHYSV EVPVFYLGLR 401: DGEEGVKDKD SGLITAYVRI SHQVYNKTED YERLRDAITE LVKDQMTCQN LPAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)