AT1G63420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis thaliana protein of unknown function (DUF821) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 676 Blast hits to 667 proteins in 137 species: Archae - 0; Bacteria - 46; Metazoa - 225; Fungi - 109; Plants - 251; Viruses - 8; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23515874..23518777 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67062.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 578 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSLFSKPRA LTSHITNFKT YRPVIGKLHV ATLTLLLFLI AAGIAVTSSL WLNKTTKAFD RPTLVATKPE PELEPPHETG VLVNCTSFLN QNRSGSCSRT 101: PLLNKKKPSH RPTITTIKPV PVRVSEKKSP EETGSSVDCS SFLNQNRSGS CSRTLQSGYN QNQTESNRSC PDYFKWIHED LKPWRETGIT KEMVERGKTT 201: AHFRLVILNG KVFVENYKKS IQTRDAFTLW GILQLLRKYP GKLPDVDLMF DCDDRPVIRS DGYNILNRTV ENAPPPLFRY CGDRWTVDIV FPDWSFWGWQ 301: EINIREWSKV LKEMEEGKKK KKFMERDAYA YWKGNPFVAS PSREDLLTCN LSSLHDWNAR IFIQDWISEG QRGFENSNVA NQCTYRYKIY IEGYAWSVSE 401: KYILACDSVT LMVKPYYYDF FSRTLQPLQH YWPIRDKDKC RSIKFAVDWL NNHTQKAQEI GREASEFMQR DLSMENVYDY MFHLLNEYSK LLKYKPQVPK 501: NSVELCTEAL VCPSEGEDVN GVDKKFMIGS LVSRPHASGP CSLPPPFDSN GLEKFHRKKL NLIRQVEKWE DSYWQKVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)