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AT1G61240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.377
plasma membrane 0.228
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF707)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G11170.1); Has 307 Blast hits to 307 proteins in 22 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFA9eggNOG:ENOG4111YFTEMBL:AK117385EMBL:BT026050EMBL:CP002684EnsemblPlants:AT1G61240EnsemblPlants:AT1G61240.1
EnsemblPlants:AT1G61240.2EnsemblPlants:AT1G61240.3EnsemblPlants:AT1G61240.4entrez:842417GeneID:842417GO:GO:0016757Gramene:AT1G61240.1
Gramene:AT1G61240.2Gramene:AT1G61240.3Gramene:AT1G61240.4hmmpanther:PTHR31210hmmpanther:PTHR31210:SF11HOGENOM:HOG000242271InterPro:IPR007877
KEGG:ath:AT1G61240OMA:VREDEGWPfam:PF05212PhylomeDB:Q8GYU5Proteomes:UP000006548RefSeq:NP_001077754.1RefSeq:NP_001117527.1
RefSeq:NP_176319.1RefSeq:NP_974064.1STRING:3702.AT1G61240.1TAIR:AT1G61240UniGene:At.43662UniProt:Q8GYU5
Coordinates (TAIR10) chr1:+:22582537..22585050
Molecular Weight (calculated) 49122.60 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.61
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHGLPSIKS WKSLVKRRNN AQEGGKSSWK MKPVVVLMCT VLLIFWYKTT NIQYEQTEIE ETDYPFEMAK ESEPVSEKLK GLPFGIMQPK SDLELKPLWS
101: SSSLRSKSGE LTNRNLLAMP VGLKQKDNVD AVVKKFLPAN FTVILFHYDG NMDQWWDLEW SSKAIHIVAH NQTKWWFAKR FLHPDIVSIY DYVFLWDEDL
201: GVENFNPQKY LRIVKTAGLE ISQPALHPNS TEVHHRITVR SRTKIFHRRV YDSRGNMKCS NASEGPPCTG FVEGMAPVFS RSAWFCTWNL IQNDLVHGWG
301: MDMKLGYCAQ GDRSKKVGIV DSEYIFHQGI QTLGGSGYPD KKNSARSGVN RRRGSATFDS RTEIRRQSTW ELQAFKERWN QAVAEDKYWV ERSSPSRNRI
401: GNNRRLKRSS MIPSLLQRKA EETTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)