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AT1G08040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF707)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 328 Blast hits to 327 proteins in 28 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJW1eggNOG:ENOG4111F1EEMBL:AY056322EMBL:AY091188
EMBL:CP002684EnsemblPlants:AT1G08040EnsemblPlants:AT1G08040.1EnsemblPlants:AT1G08040.2
entrez:837320GeneID:837320GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0016021GO:GO:0016757Gramene:AT1G08040.1
Gramene:AT1G08040.2hmmpanther:PTHR31210hmmpanther:PTHR31210:SF13HOGENOM:HOG000242272
InterPro:IPR007877KEGG:ath:AT1G08040OMA:HFNADRYPfam:PF05212
PhylomeDB:Q93ZR2Proteomes:UP000006548RefSeq:NP_001030994.1RefSeq:NP_563805.1
TAIR:AT1G08040TMHMM:TMhelixUniGene:At.26335UniProt:Q93ZR2
Coordinates (TAIR10) chr1:-:2495507..2497973
Molecular Weight (calculated) 43871.40 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.49
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTMHRSGAP RRTNENAKLI ITTIVGVVFG FFVGITLPLG SFRKISLPSG LMSSLDVAMS DGKLFSGGRS PEDIGSRKSP KIYVPTNPHG AELLPPGIIV
101: AETDFYLRRL WGEPSEDLKK KPKYLVTFTV GFEQRNNINA AVKKFSEDFQ ILLFHYDGRT TEWDQFEWSK NAIHISAKKQ TKWWYAKRFL HPDVVSAYEY
201: IFIWDEDLGV EHFNADRYVE LVKKHGLEIS QPGLEPNNGL TWEMTKRRGD RDVHKETKEK PGWCSDPHLP PCAAFVEIMA PVFSREAWRC VWHMIQNDLV
301: HGWGLDFALR RCVEPAHEKI GVVDSQWIIH QVIPSLGSQG ESEEGKSPWQ GVRERCRNEW TMFQNRVAEA DKAYMEQHKV KE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)