AT1G50140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G19740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18569921..18578663 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113290.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||
| Length | 1003 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MYTRTIRRNQ RWGFVLQQDK CLVRPVIRDH TGSQSYRSTT SILTDHLRRN HHSHGAIASR DYLSYSWNSQ LRRFSSEGDG NNASEDSRFP LNKDKMGKEK 0101: STVGVEHFDS HAQLGVQDQI EWLNNEKRAS ESRKESPFLN KRERLKNEFL RRIQPWETIQ LSWESFPYYV HEHTKDTLVE CVSSHIKQKS MTSKYGARLD 0201: SSSGRILLQS VPGTELYRER LVRALARDTQ VPLLVLDSSV LAPYDFADDY NEESESDDDI AESDQCTSQS EAEEETDGDN DDTSSSETKI EGTDDEERYL 0301: EISKEVLKKL GADIEDIEKR MSEQLYGSSE VSEAAAVDQD DKAKRPLKKG DQVKYVGSPK KDEAKHRVVL GKISTSDGQK SAFTVIPGRP LSSGQRGEVY 0401: EVIGNRVAVI FEYGDDKTSE GSEKKPAEQP QMLPIHWLDV KDLKYDLDMQ AVDGYIAMEA LNEVLQSIQP LIVYFPDSTQ WLSRAVPKTR RKEFVDKVKE 0501: MFDKLSGPIV MICGQNKIET GSKEREKFTM VLPNLSRVVK LPLPLKGLTE GFTGRGKSEE NEIYKLFTNV MRLHPPKEED TLRLFKKQLG EDRRIVISRS 0601: NINELLKALE EHELLCTDLY QVNTDGVILT KQKAEKAIGW AKNHYLASCP VPLVKGGRLS LPRESLEISI ARLRKLEDNS LKPSQNLKNI AKDEYERNFV 0701: SAVVAPGEIG VKFEDIGALE DVKKALNELV ILPMRRPELF ARGNLLRPCK GILLFGPPGT GKTLLAKALA TEAGANFISI TGSTLTSKWF GDAEKLTKAL 0801: FSFATKLAPV IIFVDEIDSL LGARGGSSEH EATRRMRNEF MAAWDGLRSK DSQRILILGA TNRPFDLDDA VIRRLPRRIY VDLPDAENRL KILKIFLTPE 0901: NLESDFQFEK LAKETEGYSG SDLKNLCIAA AYRPVQELLQ EEQKGARAEA SPGLRSLSLD DFIQSKAKVS PSVAYDATTM NELRKWNEQY GEGGSRTKSP 1001: FGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)