suba logo
AT1G48230.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.842
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G17430.1); Has 2334 Blast hits to 2327 proteins in 246 species: Archae - 0; Bacteria - 20; Metazoa - 455; Fungi - 393; Plants - 1228; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC007932EMBL:AC023673EMBL:CP002684EnsemblPlants:AT1G48230EnsemblPlants:AT1G48230.1
entrez:841243GeneID:841243Genevisible:Q9LNH5GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0008643
GO:GO:0016021Gramene:AT1G48230.1hmmpanther:PTHR11132hmmpanther:PTHR11132:SF80HOGENOM:HOG000170162InParanoid:Q9LNH5InterPro:IPR004853
KEGG:ath:AT1G48230OMA:HMVFATAPaxDb:Q9LNH5Pfam:PF03151Pfam:Q9LNH5PhylomeDB:Q9LNH5PIR:B96522
PRIDE:Q9LNH5PRO:PR:Q9LNH5ProteinModelPortal:Q9LNH5Proteomes:UP000006548RefSeq:NP_175257.1STRING:3702.AT1G48230.1SwissPalm:Q9LNH5
TAIR:AT1G48230TMHMM:TMhelixUniGene:At.43085UniProt:Q9LNH5
Coordinates (TAIR10) chr1:+:17806264..17808604
Molecular Weight (calculated) 40793.90 Da
IEP (calculated) 9.21
GRAVY (calculated) 0.72
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKMINKTLV LTYIYLLIYI ILSSGVILYN KWVLSPKYFN FPLPITLTMI HMGFSGFVAF LLIRVFKVVS PVKMTFEIYV TCVVPISAFF ASSLWFGNTA
101: YLHISVAFIQ MLKALMPVAT FLMAVVCGTD KARCDVFMNM VLVSVGVVVS SYGEINFNVI GTVYQVMGIF AEALRLVLTQ VLLQKKGLTL NPVTSLYYIA
201: PCSFVFLSLP WYVLEKPNID VSQIQFNFWI FFSNALCALA LNFSIFLVIG RTGAVTIRVA GVLKDWILIA LSTVIFPEST ITGLNITGYA IALCGVVMYN
301: YIKIKDVKAI QPTTDSLPDR ITKDWKEKNS SDGGSPRGLE LNDEEAPLIT SRLSHIGRTQ LGNHTAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)