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AT1G29790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : golgi 16618929
AmiGO : plasma membrane 17644812
TAIR : golgi 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G40830.2); Has 271 Blast hits to 269 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE3FeggNOG:ENOG410Y90WEMBL:AY093204EMBL:BT008461EMBL:CP002684EnsemblPlants:AT1G29790EnsemblPlants:AT1G29790.1
EnsemblPlants:AT1G29790.2entrez:839857GeneID:839857GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0008168Gramene:AT1G29790.1Gramene:AT1G29790.2hmmpanther:PTHR10108hmmpanther:PTHR10108:SF750HOGENOM:HOG000240829InterPro:IPR004159
InterPro:IPR029063KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-KEGG:00360+2.1.1.-
KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-KEGG:00624+2.1.1.-KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-KEGG:00940+2.1.1.-
KEGG:00941+2.1.1.-KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-KEGG:00981+2.1.1.-KEGG:ath:AT1G29790OMA:DSAVRWP
Pfam:PF03141PhylomeDB:Q8RWB7Proteomes:UP000006548RefSeq:NP_001117383.1RefSeq:NP_174272.2SMR:Q8RWB7STRING:3702.AT1G29790.1
SUPFAM:SSF53335TAIR:AT1G29790TMHMM:TMhelixUniGene:At.22452UniProt:Q8RWB7
Coordinates (TAIR10) chr1:+:10430025..10431161
Molecular Weight (calculated) 41957.80 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.03
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFTMSLNL LLLVAMVATN ILSLYHLSST TNFFQSTVKS SQSSVPTVPD HLLRQLHTIR AAINHLTTHQ PDKSTSTSTS RAAVSSSSSS TAPKELLIYS
101: KLSPIASACH NYPDLLHEYM NYTPFSLCPS DTDLVEKLIL RGCHPLPRRR CFSRTPRNPS DSKPESNVLW SYYSCKSFDC LITKFSDLGF DLSLEKSKSQ
201: FSAYKSELDL PISQLLQIAK SANSVLRLGI DVGGGTGSFA AAMKARNVTV LTTTMNFNAP YSEAVAMRGL VPLHVPLQQR LPVFDGVVDL VRCGRAVNRW
301: IPVTVMEFFF FDLDRILRGG GYLWLDRFFS KKVDLENVYA PMIGKLGYKK VKWAVANKAD SKHGEVFLTA LLQKPVAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)